BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483953
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47700.1 | Symbols: RFI2 | RING/U-box superfamily protein | ... 2045 0.0
> AT2G47700.1 | Symbols: RFI2 | RING/U-box superfamily protein
| chr2:19552314-19554584 REVERSE LENGTH=1502
Length=1502
Score = 2045 bits (1107), Expect = 0.0
Identities = 1363/1478 (92%), Gaps = 51/1478 (3%)
Strand=Plus/Plus
Query 23 gagagagagaga-gTAGAGGAAGGATAGATTTACCGCATCGGTGTTCCAAAAGGCAGACG 81
|||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 33 GAGAGAGAGAGAGGAAGAGGAAGGATAGATTTACCGCATCGGCGTTCCAAAAGGCAGACG 92
Query 82 AAATCGGAGAGAAACAAAGAGAGATAGCGATAGCGAGAGATGATTTTTCATTGATTTTTG 141
|| |||||||| || ||||||||||||||||| ||| ||| |||||||||||||
Sbjct 93 AACTCGGAGAG--AC------AGATAGCGATAGCGAGACATGGTTTCTCATTGATTTTTG 144
Query 142 TTTGACAA----TTC---TGtttttttttGTTCTTTTG-AAAACGAAAATAATTTCG-TG 192
|||||||| ||| | |||||||||||||||| | ||||||||||| ||||| ||
Sbjct 145 TTTGACAATCCTTTCTTTTCTTTTTTTTTGTTCTTTCGAAAAACGAAAAT--TTTCGTTG 202
Query 193 GCTTCCCTCCGATTTGGCCTGCTGGTGAAGATATGGCCGGAGCTAAAGATTCTGGTTGCG 252
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 203 G-TTCCCTCCGATTTGGCCTGCTGGTGAAGATATGGCCGGAGCTAAAGATTCGGGTTGCG 261
Query 253 ATGATCATCGCCGAATTGCTGGTGGATGTGGCCCTGGAAAACGCGGGAACCAGGAGGATG 312
||||| ||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 262 ATGATGATCTCCGAATTGCTGGTGGATGTGACCCTGGAAAACGCGGGAACCCGGAGGATT 321
Query 313 CCTCGTCTCCTGTCGAAGTATCATGCTCGATTTGCCTCGAATTGGTGGTCGATGATGGTA 372
||||||||||||||||||| || ||||||||||||||||||| |||| ||||||||||||
Sbjct 322 CCTCGTCTCCTGTCGAAGTCTCGTGCTCGATTTGCCTCGAATCGGTGCTCGATGATGGTA 381
Query 373 CCAGATCCAAAGCTAAGCTCCAATGTGGCCACGAATTCCATTTGGATTGCATTGGATCGG 432
|||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||| |
Sbjct 382 CCAGATCCAAGGCTAAGCTCCAATGTGGTCACCAGTTCCATTTGGATTGCATTGGATCAG 441
Query 433 CTTTTAACATGAAAGGAGCCATGCAATGCCCTAACTGTCGGAATGTCGAAAAGGGTCAGT 492
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 442 CATTTAACATGAAAGGAGCCATGCAATGCCCTAACTGTCGCAATGTCGAAAAGGGTCAGT 501
Query 493 GGTTGTATGCAAACGGTTCTACTCGCCCCTTTCCAGAGTTTTCCATGGAAGATTGGATCC 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 GGTTGTATGCAAACGGTTCTACTCGCCCCTTTCCAGAGTTTTCCATGGAAGATTGGATCC 561
Query 553 CTGAAGAAGACTTGTATGCTTTAA-CTTATCCGGAAATGCAATATCGGGTCCATTGGTGC 611
|||||||||||||||| | ||||| || ||||||||||||||||||||||||||||||||
Sbjct 562 CTGAAGAAGACTTGTACGGTTTAAGCT-ATCCGGAAATGCAATATCGGGTCCATTGGTGC 620
Query 612 CCGTTTGGTGAACTCTCTCAAGCAGCTG-TGTGTTTC-AGGGAACTGGAACCTGCAACCA 669
|||||||||||||||||||||||||| | | | |||| ||| ||||||||||||||||||
Sbjct 621 CCGTTTGGTGAACTCTCTCAAGCAGCAGCT-TCTTTCGAGG-AACTGGAACCTGCAACCA 678
Query 670 CTACATATCATAAC-GAGTTCCATGGACACCACGCCGTTGCTGTGAATCATTCGTATCTT 728
|||||||||||| | |||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 679 CTACATATCATA-CTGAGTTCCATGGACATCACGCCGCTGCTGTGAATCATTCGTATCTT 737
Query 729 GCATATGTTGGACCGGGCCCAACTGCTACCCCGAGAACTAGCGACAACAACAGCACAGAT 788
|||||||||||||| |||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 738 GCATATGTTGGACCTGGCCCAGCCGCTACCCCGAGAACTAGCGACAATAACAGCACAGAT 797
Query 789 GATCATCCCTGGAACAGCCACTCTAACGATCACTTTCACCAGCTTGCTGTTGCCCCCCAG 848
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 798 GATCATCCCTGGAACAGCCACTCTAACGATCACTTTCACCAGCTTCCTGTTGCCCCCCAG 857
Query 849 TATCATCATCATTCCCCATCGTTTTCACTACCCGGTGCTCATGTGGTTGATGGTGAAATT 908
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 858 TATCATCACCATTCCCCATCGTTTTCACTACCCGCTGCTCATGTGGTTGATGGTGAAGTT 917
Query 909 GACTCTTCAGCAGCACGAGGCCTACCTTATGCGCACCCATTTCTTTTTAGTAACCGGTCT 968
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 918 GACTCTTCAGCAGCACGAGGCCTACCTTATGCGCATCCATTTCTTTTTAGTCACCGGTCT 977
Query 969 AATCAAAGGACCTCACCAGCAATTAACAGTTACCAAGGAAGCAGCACCCAAATGCGTGAA 1028
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 AATCAAAGGTCCTCACCAGCAATTAACAGTTACCAAGGAAGCAGCACCCAAATGCGTGAA 1037
Query 1029 CACCATCATGCTTATAATCATCAGAGGCAACA---TCATGCCAATGGTCCCACTCTCGCA 1085
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1038 CAGCATCATGCTTATAATCATCAGAGGCAACAACATCATGCCAATGGTCCCACTCTCGCA 1097
Query 1086 CCACCTCTCATCTCCATGACAAGAAGAGGATTACCACCGCC---ACC------A--A-TG 1133
||||||||||||||||||||||||| |||||||| ||||| ||| | | ||
Sbjct 1098 TCACCTCTCATCTCCATGACAAGAAGGGGATTACCGCCGCCGCCACCTCCCCCACCAATG 1157
Query 1134 CCAGATCAGAACGTTGGATTCTTCCTTTATCCAAGTGGACACCATGAACCAGAAACAGAT 1193
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 1158 CCAGATCAGAACGTTGGATTCTTCATTTATCCAGGTGGACACCATGAACCAGAAACCGAT 1217
Query 1194 CAAATTCATGCTTGGGAGAGGGATTGGCTTCCG-CATTTCCCTGTCCCGTCGAATCACCG 1252
||||||||||| |||||||| |||||| |||| |||||||||||||| |||||||| ||
Sbjct 1218 CAAATTCATGCATGGGAGAGAGATTGG-TTCCCACATTTCCCTGTCCCATCGAATCATCG 1276
Query 1253 CACGATCTCTAGCTTGTGGCACAGACACTTCTGAGAAAAGTTGTGT-A---CTCTAAAGT 1308
||||||| ||||||||||||| |||||||||||||| ||||||||| | ||||| |||
Sbjct 1277 CACGATCCCTAGCTTGTGGCATAGACACTTCTGAGAGAAGTTGTGTCAGAACTCTACAGT 1336
Query 1309 CGCCTGGGAGAATTCTATCAGGCTTAATGATCAATGTATAAAAGAAAACTGGGGACTTGT 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 CGCCTGGGAGAATTCTATCAGGCTTAATGATCAATGTATAAAAGAAAACTGGGGACTTGT 1396
Query 1369 TTGATCGTTCAAA-CTTGTTTATGATGTAACTATAACTGGTTTCCAATGTACATTGTGAG 1427
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 TTGATCGATCAAAACTTGTTTATGATGTAACTATAACTGGTTTCCAATGTACATTGTGAG 1456
Query 1428 CTTTCTAAGAACCGTTGTTATAATTGATTAAACAGAAG 1465
||||| |||||| ||||||||||| |||||||| |||
Sbjct 1457 CTTTCCAAGAACAATTGTTATAATTAATTAAACACAAG 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72238584255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5