BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483956
Length=2017
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47750.1 | Symbols: GH3.9 | putative indole-3-acetic acid-am... 3072 0.0
> AT2G47750.1 | Symbols: GH3.9 | putative indole-3-acetic acid-amido
synthetase GH3.9 | chr2:19560127-19563191 REVERSE LENGTH=2155
Length=2155
Score = 3072 bits (1663), Expect = 0.0
Identities = 1888/1995 (95%), Gaps = 22/1995 (1%)
Strand=Plus/Plus
Query 1 GAGCTTGCATAATTGATGATATCAGCACTGATCttttttttttCCCTTTAACTGATATGT 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 15 GAGCTTGCATAATTGATGATATCAGCACTGA----TTTTTTTTCCCTTTAACTGATATAT 70
Query 61 TGCAAGGACAAAGTTAATATCCATTTCTGGGTATGTAAATATGGCTAAACCCACTATAAA 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 71 TGCAAGGACAAAGTTAATCTCCATTTCTGGGTATGTAAATATGGCTAAACCCACTAT-AA 129
Query 121 ATACACCTCCTTCCTTTGAGTCCTGAGGCATTCATTACCTCTCCTCCtcttcttcttctt 180
||| ||| |||| ||||||||||||||||| |||||||||||| || |||||||||||||
Sbjct 130 ATATACCCCCTTACTTTGAGTCCTGAGGCAGTCATTACCTCTCTTCTTCTTCTTCTTCTT 189
Query 181 cttcttc-ttcttTTTATTCAGCTAAAAAATGGATGTAATGAAGCTTGATTACAACTACA 239
||||||| |||||| || |||| | |||||||||||||||||||||| | | || ||
Sbjct 190 CTTCTTCTTTCTTTGGGTT-AGCTGAGAAATGGATGTAATGAAGCTTGA-T-C-ACGAC- 244
Query 240 AAGGTGGCAATGCATTAACAGAGCTCGAGAGGATCACCTCGAAAGCTGCTGAAGTTCAAG 299
| || | | ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 245 -A-GT-G---T--ATTAAAAGAGCTTGAGAGGATCACCTCGAAAGCTGCTGAAGTTCAAG 296
Query 300 ATAACATTTTATGTGGGATCTTAGAAAGAAACAAGGACACAGAGTACTTGAGTAAGTACA 359
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 297 ATAACATTTTACGTGGGATCTTGGAAAGAAACAAGGACACAGAGTACTTGAGTAAGTACA 356
Query 360 TGAAAGGCTCTAAAGACGTTGTGGAGTTTAAACGATCTGTGCCAATCATCACATACAAAG 419
|||| |||||||| || ||| ||||||||||||| ||||||||||||||| ||||||||
Sbjct 357 TGAATGGCTCTAAGGATGTTCTGGAGTTTAAACGCGCTGTGCCAATCATCATATACAAAG 416
Query 420 ATATCTATCCGTACATTCAGAGAATTGCTAATGGAGAAGACTCTTCTCTCATTACTGGCC 479
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 417 ATATCTATCCGTACATTCAGAGAATTGCTAATGGAGAAGACTCATCTCTTATTACTGGCC 476
Query 480 ATCCTATTACTGAAATATTATGCAGCTCTGGGACTTCTGCTGGAGAGCCAAAGCTAATGC 539
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ATTCTATTACTGAAATATTATGCAGCTCTGGGACTTCTGCTGGAGAGCCAAAGCTAATGC 536
Query 540 CAACCATTTCTGAAGATCTTGATCGCCGAACTTTTCTCTACAATCTTATCATTCCAATCG 599
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 537 CAACCATTCCTGAAGATCTTGATCGCCGCACTTTTCTCTACAATCTTATCATTCCAATCG 596
Query 600 TGAACAAGTACATACCAGGACTTGACAAAGGCAAAGCAATGTACCTGAATTTCGTAAAGG 659
|||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 597 TGAACAAGTACATAACAGGACTTGACAAAGGAAAAGCAATGTACCTAAATTTCGTAAAGG 656
Query 660 CTGAAACATCAACTCCTTGTGGTCTACCAATCAGAGCTGTCCTCACTAGTTACTATAAGA 719
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
Sbjct 657 CTGAAACATCAACTCCTTGTGGTTTACCAATCAGAGCTGTCCTCACTAGTTACTACAAAA 716
Query 720 GCAAGCATTTCCAGTGCAGACCTTATGATCCATTCAACGACTTAACCAGTCCTATCCAAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GCAAGCATTTCCAGTGCAGACCTTATGATCCATTCAACGACTTAACCAGTCCTATCCAAA 776
Query 780 CCATCCTTTGTGAAGACAGCAACCAAAGCATGTACTGTCAGTTACTAGCCGGTCTGATTC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CCATCCTTTGTGAAGACAGCAACCAAAGCATGTACTGTCAGTTACTAGCCGGTCTGATTC 836
Query 840 ACCGCCACAAAGTGATGCGTTTAGGAGCTGTCTTTGCTTCGGCGTTTCTCCGTGCAATCT 899
|||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 837 ACCGTCACAAGGTGATGCGTTTAGGAGCAGTCTTTGCTTCAGCGTTTCTCCGTGCAATCT 896
Query 900 CTTACCTCGAGAAGAAATGGAGTCAGCTCTGTGAAGACATCCGCACCGGTCGTCTCAACC 959
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 897 CTTATCTCGAGAAGAAATGGAGTCAGCTCTGTGAAGACATCCGCACCGGTAGTCTCAACC 956
Query 960 CCATGATCACCGATCCAGGGTGCCAAATCGCAATGTCTTGTCTTCTAACGTCGCCCGA-T 1018
||||||||||||||||||| |||||||| ||||||||||||||| ||| |||||| || |
Sbjct 957 CCATGATCACCGATCCAGGTTGCCAAATGGCAATGTCTTGTCTTTTAATGTCGCC-GAAT 1015
Query 1019 CCAGAGTTAGCTAGCGAGCTCGAAAAGATTTGTAGTCGGTCGTCGTGGAAAGGGATTCTG 1078
|||||||||||||||||| ||||| |||| ||| | ||||||||||||||||||||||||
Sbjct 1016 CCAGAGTTAGCTAGCGAGATCGAAGAGATCTGTGGGCGGTCGTCGTGGAAAGGGATTCTG 1075
Query 1079 TGTCATCTCTGGCCTAAAGCAAAGTTCATCGAAGCAGTAGTGACGGGCTCAATGGCTCAA 1138
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TGTCAGCTCTGGCCTAAGGCAAAGTTCATCGAAGCAGTAGTGACGGGCTCAATGGCTCAA 1135
Query 1139 TACATACCAGCACTTGAGTTCTTTAGCCAAGGGAAGATTCCATTGGTTTGTCCAATGTAT 1198
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1136 TACATACCTGCACTTGAGTTTTTTAGCCAGGGGAAGATTCCATTGGTTTGTCCAATGTAT 1195
Query 1199 GCCTCCTCTGAGACTTACTTTGGAGTCAACGTGGAGCCACTCTCCAAACCATCCGACGTC 1258
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1196 GCTTCCTCTGAGACTTACTTTGGAGTCAACGTGGAACCACTCTCCAAACCATCTGACGTC 1255
Query 1259 GTTTTCACTCTTTTGCCTAACATGTGCTACTTCGAGTTTATCCCTCTCGGCAAAAATGGG 1318
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1256 GTTTTCACTCTCTTGCCTAACATGTGCTACTTCGAGTTTATCCCTCTCGGCAAAAACGGG 1315
Query 1319 ACACTCTCTTTTGATCTAGACGATGATGAACAAGTCCCGTGTGATAAAGTCGTTGATTTG 1378
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 1316 ACACTCTCTTTTGATCTAGACGACGATGAACAAGTCCCCTGTGATAAAGTCGTTGACTTG 1375
Query 1379 GTCAATGTCAAACTCGGTCGCTACTATGAACTGGTCGTCACAACTTTCGCAGGATTGTAC 1438
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 GTCAATGTCAAACTCGGCCGCTACTATGAACTGGTCGTCACAACTTTCGCAGGATTGTAC 1435
Query 1439 CGATACCGAATCGGCGACGTTCTTCAAGTGGCGGGTTTCTACAACGAAGCACCACAGTTC 1498
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1436 CGTTACCGAATCGGCGACGTTCTTCAAGTGGCGGGTTTCTACAACGGAGCACCACAGTTC 1495
Query 1499 CGGTTCATCTGCCGGAGAAACGTAGTTCTAAGCATCGACTTAGACAAAACCAACGAAGAA 1558
||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1496 CGGTTTATCTGCAGGAGAAACGTGGTTCTAAGCATCGACTTAGACAAAACCAACGAAGAA 1555
Query 1559 GATCTGCACAGGAGCATAACGTTAGCCAAGAAGAAGCTTGGAAGCAACGCATTCCTGGCG 1618
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GATCTACACAGGAGCATAACGTTAGCCAAGAAGAAGCTTGGAAGCAACGCATTCCTGGCG 1615
Query 1619 GAGTACACGAGCTACGCGGACACGTCATCAGTGCCAGGCCACTACGTGCTATTCTGGGAG 1678
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1616 GAGTACACGAGCTACGCGGACACGTCATCAGTGCCAGGTCACTACGTGCTATTCTGGGAG 1675
Query 1679 ATCCAAGGTCATCTGGAGCCGAAGCTGATGGAAGGGTGTTGCGTTGCGGTCGAGGAAGAG 1738
|||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct 1676 ATCCAAGGTCATCTCGAGCCGAAACTGATGGAAGAGTGTTGCGTTGCGGTGGAGGAAGAG 1735
Query 1739 CTGGATTACATATACAGACAATGCAGGACGAAAGAGAGATCGATAGGGGCGTTAGAGATC 1798
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1736 CTGGACTACATATACAGACAGTGCAGGACGAAAGAGAGATCGATAGGGGCATTAGAGATC 1795
Query 1799 AGAGTGGTGAAACCAGGAACGTTCGAGAAACTGATGGATCTGATTATAAGCCAGGGAGGG 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1796 AGAGTGGTGAAACCAGGAACGTTCGAGAAACTGATGGATCTGATTATAAGCCAAGGAGGG 1855
Query 1859 TCGTTTAATCAGTATAAAACGCCCAGATGTGTTAAGTCCAACAGTGCAACGTTCAAGCTC 1918
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1856 TCGTTTAATCAGTATAAAACGCCGAGATGTGTCAAGTCCAACAGTGCAACGTTCAAGCTC 1915
Query 1919 TTGAACGGACACGTAACGGCTTCTTTCTTTAGCCCTCGTGACCCGACTTGGGTCCCGTGA 1978
|||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 1916 TTGAACGGACACGTAATGGCTTCTTTCTTTAGCCCTCGTGACCCGACTTGGGTTCCATGA 1975
Query 1979 TCCTCAAGACTTTTA 1993
||| |||||||||||
Sbjct 1976 TCC-CAAGACTTTTA 1989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99949285095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5