BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483964 Length=761 Score E Sequences producing significant alignments: (Bits) Value AT2G47810.1 | Symbols: NF-YB5 | nuclear factor Y, subunit B5 | ... 678 0.0 > AT2G47810.1 | Symbols: NF-YB5 | nuclear factor Y, subunit B5 | chr2:19582750-19583618 REVERSE LENGTH=869 Length=869 Score = 678 bits (367), Expect = 0.0 Identities = 450/487 (92%), Gaps = 17/487 (3%) Strand=Plus/Plus Query 189 ATTCGTTCCAAAATCCAATCCCTCGATACCAGAATTATAACTTCGCAAGCAGCTCGTCTC 248 ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| Sbjct 215 ATTCGTTCCAAAATCCAATCCCTCGATACCAGAATTACAACTTCGGGAGCAGCTCATCTA 274 Query 249 ATCATCAACAT---CA--A-----CA-T-GTGGTGGTGGAGGATCAACAACAAGAAGAAA 296 ||||||||||| || | | | |||||||||||||||||||| |||||||||| Sbjct 275 ATCATCAACATGAACATGATGGGTTAGTGGTGGTGGTGGAGGATCAACAGCAAGAAGAAA 334 Query 297 GCATGATGATAAAAGAACAAGACAGGCTACTTCCGATAGCAAACGTAGGAAGGATCATGA 356 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 335 GCATGATGGTAAAAGAACAAGACAGGCTACTTCCGATAGCAAACGTAGGAAGGATCATGA 394 Query 357 AGAACATTCTCCCACCAAACGCAAAGGTCTCCAAAGAAGCCAAAGAGACTATGCAAGAAT 416 ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 395 AGAACATCCTCCCAGCAAACGCAAAGGTCTCTAAAGAAGCCAAAGAGACTATGCAAGAAT 454 Query 417 GTGTCTCCGAGTTCATTAGCTTCGTCACCGGAGAAGCATCCGATAAATGTCACAAGGAGA 476 |||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 455 GTGTGTCCGAGTTCATTAGCTTCGTCACGGGAGAAGCATCCGATAAATGCCACAAGGAGA 514 Query 477 AGCGAAAGACCGTCAATGGAGACGATATCTGTTGGGCTATGGCAAATCTAGGGTTTGATG 536 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 515 AGCGAAAGACCGTTAATGGAGACGATATCTGTTGGGCTATGGCTAATCTAGGGTTTGATG 574 Query 537 ATTATGCCGCCCAGCTCAAGAAGTACTTGCATCGTTACCGAGTTCTCGAAGGTGAGAAAC 596 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 575 ATTACGCCGCCCAGCTCAAGAAGTACTTACATCGTTACCGAGTTCTCGAAGGTGAGAAAC 634 Query 597 CTAATCATCATCATGGCAAAGGAGGACCTAAATCCTCGCCGGATAATTAA--TTCTTCCA 654 |||||||||| | |||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 635 CTAATCATCA-C--GGCAAAGGAGGACCTAAATCCTCGCCAGATAATTAAAATTCTTCCA 691 Query 655 TCGGTTT 661 ||| ||| Sbjct 692 TCGCTTT 698 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36972332192 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5