BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483964

Length=761
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G47810.1 | Symbols: NF-YB5 | nuclear factor Y, subunit B5 | ...   678    0.0  


> AT2G47810.1 | Symbols: NF-YB5 | nuclear factor Y, subunit B5 
| chr2:19582750-19583618 REVERSE LENGTH=869
Length=869

 Score =  678 bits (367),  Expect = 0.0
 Identities = 450/487 (92%), Gaps = 17/487 (3%)
 Strand=Plus/Plus

Query  189  ATTCGTTCCAAAATCCAATCCCTCGATACCAGAATTATAACTTCGCAAGCAGCTCGTCTC  248
            ||||||||||||||||||||||||||||||||||||| |||||||  |||||||| ||| 
Sbjct  215  ATTCGTTCCAAAATCCAATCCCTCGATACCAGAATTACAACTTCGGGAGCAGCTCATCTA  274

Query  249  ATCATCAACAT---CA--A-----CA-T-GTGGTGGTGGAGGATCAACAACAAGAAGAAA  296
            |||||||||||   ||  |      | | |||||||||||||||||||| ||||||||||
Sbjct  275  ATCATCAACATGAACATGATGGGTTAGTGGTGGTGGTGGAGGATCAACAGCAAGAAGAAA  334

Query  297  GCATGATGATAAAAGAACAAGACAGGCTACTTCCGATAGCAAACGTAGGAAGGATCATGA  356
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  335  GCATGATGGTAAAAGAACAAGACAGGCTACTTCCGATAGCAAACGTAGGAAGGATCATGA  394

Query  357  AGAACATTCTCCCACCAAACGCAAAGGTCTCCAAAGAAGCCAAAGAGACTATGCAAGAAT  416
            ||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  395  AGAACATCCTCCCAGCAAACGCAAAGGTCTCTAAAGAAGCCAAAGAGACTATGCAAGAAT  454

Query  417  GTGTCTCCGAGTTCATTAGCTTCGTCACCGGAGAAGCATCCGATAAATGTCACAAGGAGA  476
            |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct  455  GTGTGTCCGAGTTCATTAGCTTCGTCACGGGAGAAGCATCCGATAAATGCCACAAGGAGA  514

Query  477  AGCGAAAGACCGTCAATGGAGACGATATCTGTTGGGCTATGGCAAATCTAGGGTTTGATG  536
            ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  515  AGCGAAAGACCGTTAATGGAGACGATATCTGTTGGGCTATGGCTAATCTAGGGTTTGATG  574

Query  537  ATTATGCCGCCCAGCTCAAGAAGTACTTGCATCGTTACCGAGTTCTCGAAGGTGAGAAAC  596
            |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  575  ATTACGCCGCCCAGCTCAAGAAGTACTTACATCGTTACCGAGTTCTCGAAGGTGAGAAAC  634

Query  597  CTAATCATCATCATGGCAAAGGAGGACCTAAATCCTCGCCGGATAATTAA--TTCTTCCA  654
            |||||||||| |  |||||||||||||||||||||||||| |||||||||  ||||||||
Sbjct  635  CTAATCATCA-C--GGCAAAGGAGGACCTAAATCCTCGCCAGATAATTAAAATTCTTCCA  691

Query  655  TCGGTTT  661
            ||| |||
Sbjct  692  TCGCTTT  698



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36972332192


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5