BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483966
Length=2640
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47820.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 3559 0.0
> AT2G47820.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G09040.1);
Has 628 Blast hits to 543 proteins in 149 species: Archae
- 0; Bacteria - 106; Metazoa - 145; Fungi - 69; Plants - 97;
Viruses - 10; Other Eukaryotes - 201 (source: NCBI BLink).
| chr2:19587408-19590822 FORWARD LENGTH=2845
Length=2845
Score = 3559 bits (1927), Expect = 0.0
Identities = 2273/2439 (93%), Gaps = 28/2439 (1%)
Strand=Plus/Plus
Query 1 CTTCAGACGCGAAGTTGACATCTAGATTCAATACATATCATCGATAGATTCATTTCTTTT 60
||||| |||||||||||||||||||||||||||| || | ||| | || | |||||
Sbjct 100 CTTCACACGCGAAGTTGACATCTAGATTCAATAC--AT-A--GATTGGCTC--TGCTTTT 152
Query 61 TGATTTTATTGCTCGACGTTGAATGTTCCGActtcttcttgctcttcttcttcttctGTG 120
|||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||
Sbjct 153 TGATTTTATTGCTCCACGTTGAATGTTCCGA---CTTCTT-CT-TTCTTCTTCTTCTGTG 207
Query 121 GAGGTTAGTTGCCAAAGTCTTCCTGTGATGGAGCCTATTCATTCAGATGACAT---GGAA 177
||| || ||| | ||| || ||||||||||||||||||||||||||| ||||
Sbjct 208 GAGATTTCTTGGTGGTGACTTACTCAGATGGAGCCTATTCATTCAGATGACATGGAGGAA 267
Query 178 GGTTTTCTCCATGATTCCTCTAAGCTACTCAATTCCCCTTATCTCAATGGTATTAACGGA 237
| |||| || |||| ||||||| |||| | |||||||||||||| ||||||||| |||||
Sbjct 268 GCTTTTGTCGATGAATCCTCTATGCTATTGAATTCCCCTTATCTTAATGGTATTCACGGA 327
Query 238 GATCCTGA-GCTACTTCCTCGCGTTGGAGATCAGTACCAGGCTGATATTCCTGTGCTACT 296
|| ||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 328 GACCCTGATG-TACTTCCTCGCGTTGGAGATCAGTACCAGGCTGATCTACCTGTGCTACT 386
Query 297 CACTGACTCTGATCGTTTAAAGCTCATTAGATGCTTTCATTCAGATCCTCCCCTGCATAG 356
|||||| ||||||||| |||||||||||| |||||||||||||| ||||||||||| |
Sbjct 387 CACTGAGTCTGATCGTCTAAAGCTCATTACTTGCTTTCATTCAGAGCCTCCCCTGCAGAA 446
Query 357 TCTCCTTACTTTTCGCTTGCCTATCCCACTTATGTGGACTAGAAGTGAGAAATTCAGAGG 416
|||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 447 ACTCCTTACTTTTGGCTTGCCTATCCCTCTTATGTGGACAAGAAGTGAGAAATTCAGAGG 506
Query 417 TTTCCGCGAAGCCGATATTGA-AATAGGCAGTCCACCAATC---CATCAATCCTTGCACA 472
|||||| |||||||||||||| || || |||||||||| || ||||||||||||| |
Sbjct 507 TTTCCGTGAAGCCGATATTGATAA-AGCCAGTCCACCAGTCGATGATCAATCCTTGCAGA 565
Query 473 AAGCTGCTTCCATCAAACCTAGGAGTATTGTGCTTGCATTGCCATGCCaaaaaaaTGCCA 532
| ||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 566 ATGCTGCTTGCATGAAACCGAGGAGTATTGTGCTTGCATTGCCTTGCCAAAAAAACGCCA 625
Query 533 AGTTCAAGTTTGACTGGCTCGATAAGAGCCTCTATCCATTCCCTGGGACTTTGGGTCAAT 592
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 626 AGTTCAAGTTTGACTGGCTCGATAAGACCCTCTATCCATTCCCTGGGACTTTGGGTCAAC 685
Query 593 CTTGGGAAGATGCTGAGCAAGAGAGGTTTCTTCTTGGCCTCTACTGTCTTGGGAAAAACC 652
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 686 CTTGGGAAGATGCTGAGCAAGAGAGGTTTCTTCTTGGCCTCTACTGTCTTGGCAAAAACC 745
Query 653 TTGTCTTGGTGCAGAGGTTTGTTGGGAGCAAGCACATGGGAGATTTGCTCTCTTACTATT 712
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 746 TTGTCTTGGTGCAGAGATTTGTTGGGAGCAAGCACATGGGAGATATGCTCTCTTACTATT 805
Query 713 ACGGCAGCTTTTACAGGTCTAATGAATACCAGAGATGGGTTGATGGACGCAAGTCGAGAA 772
||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| ||||
Sbjct 806 ACGGCAGCTTTTACAGGTCTACTGAATACCGGAGATGGGTAGATGGACGCAAGTCCAGAA 865
Query 773 CCAGACGCTCTGTTCAAGGCCAGAAGTTATTATCAGGTTGGAGGCAACAAGAATTGCTCT 832
|||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 866 GCAGACGGTCTGTTCAAGGCCAGAAATTATTATCAGGCTGGAGGCAACAAGAGTTGCTCT 925
Query 833 CTCGGATCTCGTCTCATGTCTCTGAGGAATGCAAGAGTACGTTGCTTAAGGTATCTAAAG 892
||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct 926 CTCGGATCTCGTCTCATGTATCCGAGGAATGCAAGATTACGTTGCTTAAGGTATCTAAAG 985
Query 893 CTTTTAGGGAAGATAAGATTGCACTGGAGGATTATGTGTTCGCTTTAAAGAATACTGTAG 952
| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||
Sbjct 986 CATTTAGGGAAGATAAGATTGCACTGGAGGATTACGTCTTCACTTTAAAGAATACTGTAG 1045
Query 953 GTATTGATATGCTTACACAAGTAATTGGTATAGGGAAAGGGAAAAGAGACCTGACCAACT 1012
| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 1046 GCATTGATATGCTTACACAAGTTATTGGTATAGGTAAAGGGAAAAGAGATCTGACCAACT 1105
Query 1013 GCGCGTTAGAGCCAACCAAGTTGAATCATGGAGCCTCTGGTAACTCTGAAGTACGAATAC 1072
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1106 GCGCGTTAGAGCCAACCAAGTTGAATCATGGAGCCTCTGGTAACTCTCAAGTACGAATAC 1165
Query 1073 GCAATGATCTTCCGATAGCGGATATAGTCAAATTCCTAACAGGGGAATATAGGATGAGCA 1132
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1166 GCAATGATCTTCCGATTGCGGATATAGTCAAATTCCTAACAGGAGAATATAGGATGAGCA 1225
Query 1133 AAACACGGTCCAGTGACCTCTTCTGGGAAGCTGTTTGGCCACGTTTGTTGGCAAGAGGGT 1192
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1226 AAACACGGTCCAGTGACCTCTTCTGGGAAGCTGTTTGGCCACGTTTGCTGGCAAGAGGGT 1285
Query 1193 GGCACTCTGAGCAGCCGAAAGATGGTCCAAAGAATTCTCTTGTTTTTCTCGTTCCGGAAG 1252
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1286 GGCACTCTGAGCAGCCGAAAGATGGTCCAAAGAATTCTCTGGTTTTTCTCGTTCCGGAAG 1345
Query 1253 CGAATAAGTTTTCCAGGAGGAAGATGTCAAAGGGGAATCACTACTTTGACTCTCTCACTG 1312
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 CCAATAAGTTTTCCAGGAGGAAGATGTCAAAGGGGAATCACTACTTTGACTCTCTCACTG 1405
Query 1313 ATGTCTTGAACAAAGTTGCTTTAGACCCCTCACTACTTGAGCTTGATGAGGATCTAGAGA 1372
||||||||||||||||||||||||| ||| | || |||||||||||||||||||||||||
Sbjct 1406 ATGTCTTGAACAAAGTTGCTTTAGATCCCACTCTTCTTGAGCTTGATGAGGATCTAGAGA 1465
Query 1373 ACAAGGGGAGCAAAGAAGAGGTAATCAAGAATGACCCTCCCATAAATTTAGAGGAGTTTG 1432
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1466 GGAAGGGGAGCAAAGAAGAGGTTATCAAGAATGACCCTCCCACAAATTTAGAGGAGTTTG 1525
Query 1433 ATGATTCTTCACCAAACAGCAAGAAGAAGAAAAAGTACCTACAACCACGTAGCAAAACAA 1492
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1526 ATGATTCTTCACCAAACAGCAAGAAGAAGAAAAAGTACCTACAGCCACGCAGCAAAACAA 1585
Query 1493 GAAAAATTCAGGAGGTCATGATGTTTACGATTATCGATACCAGTGAGACGAATGGTGTGG 1552
|||||||||||||||||||| ||||||| |||||||||||||||||||||||| || | |
Sbjct 1586 GAAAAATTCAGGAGGTCATGTTGTTTACAATTATCGATACCAGTGAGACGAATAGTATAG 1645
Query 1553 AAGGATGTACATTGAAAGAGCTCAGATCTCTGCCTGTTGGGACCGGCAGTTCCCA-AGTT 1611
|||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 1646 AAGGATGTACATTGAAAGAGCTCAGATCTCTGCCTGTTGGGACCGGCAGTTCA-ATAGCT 1704
Query 1612 CACTCCCCAAGTTACTTGAGTGAATCTGAAGATAACCTGTCAGAAGAATCTGAAAACAAG 1671
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1705 AACTCCTCAAGTTACTTGAGTGAATCTGAAGATAACATGTCAGAAGAATCTGAAAACAAG 1764
Query 1672 GCAGAGACGACAGCTAAATCAATGGCTTCGAGAGTGTGTGGTGGGGGCAGCATTAATTCT 1731
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1765 GCAGAGACGACAGCTAAATCAATGGCTTCGAGAGTGTGTGGTGGGGGCAGCATTAGTTCT 1824
Query 1732 GGTAAGAGCAGCTCTGTAAACATGGACAATGCCACGAGTCGAAGCACCAATTCTCTCAAT 1791
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1825 GGTAAGAGCAGCTCTGTAAACATGGACAATGCCACGAGTCCAAGCACCATTTCTCTCAAT 1884
Query 1792 GAGAGACAGCAGAGGAACCGGAAAGGCGGGAGACCAAGAAATCCAAAGTTGTTACCTGTC 1851
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1885 GAGAGACAGCAGAAGAACCGGAAAGGCGGGAGACCAAGAAATCCAAAATTGTTACCTGTC 1944
Query 1852 TGCACCAAAAGGAGTAGCTTGGCAGATTGTACCTTGAGAGAAGCAGGTTGTTTTGGTGAA 1911
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1945 TGCACCAAAAGGAGTAGTTTGGCAGATTGTACCTTGCGAGAAGCAGGTTGTTTTGGTGAA 2004
Query 1912 ACCCAGTCCAGGAAGAAGAAACCAGTGAAGAAGGGGAAACATATGAGACCAAACCCATTA 1971
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 2005 ACCCAGTCCAGGAAGAAGAAACCATTGAAGAAAGGGAAACATATGAGACCAAACCCATTA 2064
Query 1972 GAAGCTGATCTAAATGTAGTGTTGATGAGAGAGGAACACATCGATC-AAGATCAAACACT 2030
||||||||||||||||||| |||| ||||||||| | |||| | | ||||| |||| ||
Sbjct 2065 AAAGCTGATCTAAATGTAGTATTGACGAGAGAGGAGCGCATCAA-CGAAGATAAAACTCT 2123
Query 2031 GAAACTGTCCTCAACCAGTTCCTTTGCAATAGATAGCTCTTGTCGAAGAAACGA-AGACC 2089
||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 2124 GAAACTGTCCTCAACCAGTTCCTTTGCAAGAGATAGCTCTTGTCGAAGAAAC-ATAGACC 2182
Query 2090 GAGAAATATCACCAGAACGATCTGAGACCAGAGAAGATTTTGATTTGAACGTTTCACAGA 2149
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
Sbjct 2183 GAGAAATATCACCAGAACGATCTGAAAGCAGAGAAGATTTTGATTTGAACGTTTCACAAA 2242
Query 2150 TCTCCCTAGAACGTGAAGCTGATAATACTGATACTGTCATCGTAGACATTGTACAGAACA 2209
||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||||
Sbjct 2243 TCTCCCTAGAACGTGAAGCTGATGGTACTGATACTGTCATGGCAGACGTTGTACAGAACA 2302
Query 2210 GTGAGAGCTCTTGTGCCGAGCAGTCTTCTGTTCAAGTGGATGTAGAAATGCAGTGTAAGC 2269
||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||
Sbjct 2303 GTGAGAGCTCTTGTGCCGAGCAGTCCTCTGTTCAAGTGGATGTGGAAAAGCAGTGTAAGC 2362
Query 2270 CTCAGGAGTTGCGAGTAACCGCAGATCTCCTTCCTGGACGGAGGCAGAGTACAAGGACCC 2329
|||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 2363 CTCAGGAGTTGCAAGTAACCGCGGATCTCCTTCCTGAACGGAGGCAGAGTACAAGGACCC 2422
Query 2330 GACCGTTGACTACAAAGGCACTGGAAGCTTTTGCTTTTGGGTACCTTGGTAACTCGAATA 2389
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2423 GACCCTTGACTACAAAGGCACTGGAAGCTTTTGCTTTTGGGTACCTTGGTAACTCGAATA 2482
Query 2390 AGAAGAGAAAGGCTTCAGAGGAGTCAAGAACAAAGTCTA 2428
|| |||||||||||||||||||||| |||||||||||||
Sbjct 2483 AGGAGAGAAAGGCTTCAGAGGAGTCGAGAACAAAGTCTA 2521
Score = 361 bits (195), Expect = 2e-98
Identities = 245/267 (92%), Gaps = 12/267 (4%)
Strand=Plus/Plus
Query 2386 AATAAGAAGAGAAAGGCTTCAGAGGAGTCAAGAACAAAGTCTACAAAGCGCATCCACCGT 2445
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2521 AATAAGAAGAGAAAGGCTTCAGAGGAGTCAAGAACAAAGTCTACAAAGCGCATCCATCGT 2580
Query 2446 CACTCACTTGTGTCCTCCAAGTTCAGAAACGGAACTGTAGAGGATGGTTCAAACACTGAC 2505
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2581 CACTTACCTGTGTCCTCCAAGTTCAGAAACGGAACTGTAGAGGATGGTTCAAACACTGAC 2640
Query 2506 GAGAATGAATAGACTAGCTTCGATCTGAAATTGACATGTCTGCATATACT-A--AA---- 2558
|||| |||||||||||||||||||||||||||||||| |||||| ||||| | ||
Sbjct 2641 GAGACTGAATAGACTAGCTTCGATCTGAAATTGACATTTCTGCAAATACTGACCAAGCGC 2700
Query 2559 -----TTGGGAGGAATTTAGCAGTTAGAGTCAATATAGCAACATAGTTAGAGTAAATGTT 2613
||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 2701 AAAAATTGGGAGGACTTTAGCAGCTAGAGTCAATATAGCAACATAGTTATAGTAAATGTT 2760
Query 2614 TTGCCTTTTGTTTCTGTCACCCTCATC 2640
||||||||||||||||| |||||||||
Sbjct 2761 TTGCCTTTTGTTTCTGTTACCCTCATC 2787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131086222059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5