BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483969
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47840.1 | Symbols: | Uncharacterised conserved protein ycf... 992 0.0
> AT2G47840.1 | Symbols: | Uncharacterised conserved protein ycf60
| chr2:19594187-19595001 REVERSE LENGTH=815
Length=815
Score = 992 bits (537), Expect = 0.0
Identities = 606/639 (95%), Gaps = 5/639 (1%)
Strand=Plus/Plus
Query 1 AATGGCGTCTCTGTGCCTCTCTCTCCACCAAACCCTAAGTACTAATCCCCTGGCGGCTCT 60
|||||||||||||||||| ||||||||||||||||| | |||||||||||| ||||||
Sbjct 44 AATGGCGTCTCTGTGCCTTTCTCTCCACCAAACCCT-A--ACTAATCCCCTGTCGGCTCC 100
Query 61 CAGAGGCAGACCACTCAGCCTCTCCTTCCCCGGATCCTCCACCGTCTCCATCCGCCCCTC 120
|||| |||||||||||||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 101 CAGATGCAGACCACTCAGCCTCTCCTTCCCCGGATCCTCAACCTTCTCGATCCGCCCCTC 160
Query 121 -AGGCAGACACGCAACCGCCGTGACGACACGCGCCTCCTACACCCCGACGCCGGCGACGG 179
| |||||| |||||||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 161 TA-GCAGACGCGCAACCGCCTTGACGACCCGCGCCTCCTACACCCCGACGCCGGCGACTG 219
Query 180 AGCGCGTGATTTCGATAGCGTCGTACGCGCTGCCGTTCTTCAATTCGCTGCAGTACGGGC 239
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 220 AGCGCGTGATTTCGATAGCGTCGTACGCGCTGCCGTTCTTCAATTCTCTGCAGTACGGGC 279
Query 240 GATTCCTGTTCGCGCAGTACCCTAGGCTAGGATTGCTGTTCGAGCCAATATTCCCAATCC 299
| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 280 GGTTCCTGTTCGCGCAGTACCCAAGGCTGGGATTGCTGTTCGAGCCAATCTTCCCAATCC 339
Query 300 TGAACCTGTACAGATCGGTGCCGTACGCGAGCTTCGTGGCATTCTTCGGGCTGTACCTGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 TGAACCTGTACAGATCGGTGCCGTACGCGAGCTTCGTGGCATTCTTCGGGCTGTACCTGG 399
Query 360 GCGTGGTGAGGAACACGAGTTTGAGTAGGTACGTGAGGTTCAACGCGATGCAGGCGGTGA 419
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 400 GAGTGGTGAGGAACACGAGTTTCAGTAGGTACGTGAGGTTCAACGCGATGCAGGCGGTGA 459
Query 420 CGCTGGATGTGCTACTGGCGGTGCCGGTGCTGCTGACCCGAATACTGGATCCGGGTCAAG 479
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 460 CGCTGGATGTGCTCCTGGCGGTTCCGGTGCTGCTGACCCGAATACTGGATCCGGGTCAAG 519
Query 480 GAGGCGGGTTTGGAATGAAGGCGATGATGTGGGGACACACGGGTGTGTTCGTCTTCAGCT 539
|||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 520 GAGGCGGGTTTGGAATGAAGGCGATGATGTGGGGGCACACGGGGGTTTTCGTCTTCAGCT 579
Query 540 TTATGTGTTTTGTTTACGGAGTCGTCAGCTGCTTACTCGGCAAAACTCCCTACATTCCCT 599
||||||||||||| || ||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 580 TTATGTGTTTTGTGTATGGAGTCGTCAGCTCCTTACTCGGCAAAACTCCATACATTCCAT 639
Query 600 TTGTCGCTGATGCCGCCGGTAGACAACTCTAATTCCGGC 638
|||||||||||||||||||||||||||||||||||||||
Sbjct 640 TTGTCGCTGATGCCGCCGGTAGACAACTCTAATTCCGGC 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32601961403
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5