BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483978
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47890.1 | Symbols: | B-box type zinc finger protein with C... 1779 0.0
> AT2G47890.1 | Symbols: | B-box type zinc finger protein with
CCT domain | chr2:19607996-19609645 FORWARD LENGTH=1417
Length=1417
Score = 1779 bits (963), Expect = 0.0
Identities = 1298/1444 (90%), Gaps = 85/1444 (6%)
Strand=Plus/Plus
Query 1 TAAAGAAAGGCACGGGAAGGTGAAGAGAGTACTAGCTAGTGTGTTTCCAGCTTCTTCCCC 60
||||||||||||||||||||||||||||| | | || | ||||||||||||||||||
Sbjct 2 TAAAGAAAGGCACGGGAAGGTGAAGAGAG---T-G-TA--G-GTTTCCAGCTTCTTCCCC 53
Query 61 AAGAAAT--AA-G-AATTGACTTTGTCTAAGC-AA-ATGGCGTCACTTTGACGTCA-T-A 112
||||||| || | | |||||||||||||||| || ||| ||||||||| |||||| | |
Sbjct 54 AAGAAATAAAATGTATTTGACTTTGTCTAAGCAAATATGTCGTCACTTTAACGTCATTCA 113
Query 113 --ACCTAGAATGCAATTAAGATATGGCTTTTACATAAGCCACCAAAATT-G----GTT-- 163
|||||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 114 TTACCTAGAATGCAATTAAGATATGGCTTTTACATAAGCCACCAAATTTGGTTTTGTTGC 173
Query 164 --CAAAATATCCCAAG-AAA-A-CAACTTCTTCTTCTTACCAAATCTGTCGGCGTCGTCT 218
|||||||||||||| ||| | ||||||||||||||||||||| |||||||||||||||
Sbjct 174 CCCAAAATATCCCAAGAAAAGATCAACTTCTTCTTCTTACCAAAACTGTCGGCGTCGTCT 233
Query 219 CTAATCTAAGCTCCTCCTATGGAAGAAGAAGAAGGTCATCAGCAACGTCACCGCCTCTGC 278
| ||||||||||||| ||||||| |||||||||||||||| ||| |||||||||||
Sbjct 234 C--CTCTAAGCTCCTCCCATGGAAGCAGAAGAAGGTCATCAG---CGTGACCGCCTCTGC 288
Query 279 GACTATTGCGACTCCTCCGTGGCTCTTGTCTACTGCAAAGCTGACTCCGCCAAGCTCTGT 338
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 GACTATTGCGACTCCTCCGTGGCTCTTGTCTACTGCAAAGCTGACTCCGCCAAGCTCTGC 348
Query 339 CTCGCCTGCGACAAGCAAGTCCACGTCACCAACCAACTCTTCGCCAAACACTTCAGGTCA 398
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 349 CTCGCCTGCGACAAGCAAGTCCACGTCGCCAACCAACTCTTCGCCAAACACTTCAGGTCA 408
Query 399 CTTCTCTGCGACTCCTGCCACGACTCTCCCTCTTCCCTTTTCTGCGAGACGGAAAGGTCT 458
|||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 409 CTTCTCTGCGACTCCTGCAACGAATCTCCCTCTTCCCTTTTCTGCGAGACTGAAAGGTCT 468
Query 459 GTTCTTTGCCAGAACTGCGACTGGCAACACCACACCGCCTCTTCCTCCCTCCATAGCCGC 518
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 469 GTTCTTTGCCAGAACTGCGACTGGCAACACCACACCGCCTCTTCCTCCCTTCATAGCCGC 528
Query 519 AGACCCTTTGAAGGTTTTACCGGCTGTCCCTCCGTGCCTGAGTTGTTGGCAATCGTTGGC 578
|||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 529 AGACCCTTTGAAGGATTTACCGGCTGTCCCTCCGTGCCTGAGTTGCTGGCCATCGTTGGC 588
Query 579 CTCGATGACCTCACTCTCGATTCCGGATTGCTTTGGGAGTCCCCGGAGATCGCTAGCCTC 638
||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||
Sbjct 589 CTCGATGACCTCACTCTCGATTCCGGATTGCTTTGGGAGTCACCTGAGATCGTTAGCCTC 648
Query 639 AACGACCTTGTTGTTTCGGGCGGGTCTGGTACTCATAACTTCCGGGCCACGGATGTTCCT 698
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 649 AACGACCTTATTGTTTCGGGCGGGTCGGGTACTCATAACTTCCGGGCCACGGATGTTCCT 708
Query 699 CCTCTGCCTAAGAATCGTCACGCCACCTGCGGTATATACAAAGCCGAGATGATCCGCCAG 758
|||||||||||||||||||||||||||||||| | |||||||| ||||||||||| |||
Sbjct 709 CCTCTGCCTAAGAATCGTCACGCCACCTGCGGGAAATACAAAGATGAGATGATCCGACAG 768
Query 759 CTCCGTGGACTAGCGAGATCCGAG-CGGAGTTGTCTGAAATTCGAAACCCCGGAAGCTGA 817
|||||||||||| | ||||| ||| | | ||||||||||||| |||||||| || |||||
Sbjct 769 CTCCGTGGACTATCCAGATCTGAGCCTG-GTTGTCTGAAATTTGAAACCCCAGATGCTGA 827
Query 818 GATGGATGCCGGATTCCAGTTCCTGGCGCCGGATTTGTTTTCTACAAGCGAGCTGGAGAG 877
||| |||||||| ||||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 828 GATCGATGCCGGGTTCCAATTCCTAGCGCCGGATTTGTTTTCTACATGCGAGCTGGAGAG 887
Query 878 TGGACTGAAATGGTTCGATCAGCAAGATCATGAGGACTTTCCATATTGCTCTCTGCTAAA 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TGGACTGAAATGGTTCGATCAGCAAGATCATGAGGACTTTCCATATTGCTCTCTGCTAAA 947
Query 938 GAACTCGTCAGAGTCAGATGAGAAACCTGAGAATGTAGACCGAGAGTC-T---T------ 987
||||| ||| |||||||||||||||||||||||||||||||||||||| | |
Sbjct 948 GAACTTGTCGGAGTCAGATGAGAAACCTGAGAATGTAGACCGAGAGTCATCGGTGATGGT 1007
Query 988 -C---TT-C-GG-TGATG-----GA-G-GAGGA-GAT--TGTGATGGTGCCCGTT-TGCA 1029
| || | || || | || | ||||| || ||||||||| || ||| | ||
Sbjct 1008 TCCCGTTTCCGGCTGCTTAAACCGATGTGAGGAAGAGACTGTGATGGTTCCGGTTAT-CA 1066
Query 1030 CTAGTACAAGGTCGACGACACATGAGATCAACAGTCTTGAGAGGAACTCTGCTCTCTCTC 1089
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 CTAGTACAAGGTCGATGACACATGAGATCAACAGTCTTGAGAGGAACTCTGCTCTCTCTC 1126
Query 1090 GCTACAAAGAAAAGAAGAAATCTCGAAGGTACGAGAAACACATCAGGTATGAATCACGCA 1149
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 GCTACAAAGAAAAGAAGAAGTCTCGAAGGTACGAGAAACACATCAGGTATGAATCACGCA 1186
Query 1150 AGGTTCGAGCAGAAAGCAGGACAAGAATCAGGGGACGTTTCGCCAAGGCAGCAGATCCAT 1209
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 AGGTTCGTGCAGAAAGCAGGACAAGAATCAGGGGACGTTTCGCCAAGGCAGCAGATCCAT 1246
Query 1210 GAATGATG-TGTCCAATTACTTTGATAACCAAAAAGAACTTTTGTATTATCAATGGAATC 1268
|||||||| || |||||||||||| |||||| ||||||||||| | | |||||
Sbjct 1247 GAATGATGATGAGG--TTACTTTGATAATCAAAAAT--CTTTTGTATTA--A-TCGAATC 1299
Query 1269 ATATAATAATGTCTATGATCAGATAAGTTTTTGTAATTCTAAGCTTAGGAGTTTACCACT 1328
||||| | ||| ||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 1300 ATATAGTG-TGT--ATGATCAGATAAGTTTTTGTA-TTCTAAGCTTAGGAGTT-ATCACT 1354
Query 1329 GTATATCGACCACACTCTCAAA-TAGTCACTTAAGAAACCGTCTGttttttttttGTTTT 1387
|||||||||||||||||||||| | |||||||||||| | ||||||||||||||||
Sbjct 1355 GTATATCGACCACACTCTCAAAATTGTCACTTAAGAA----TA-GTTTTTTTTTTGTTTT 1409
Query 1388 GCCT 1391
||||
Sbjct 1410 GCCT 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68523743925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5