BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483982
Length=713
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47910.1 | Symbols: CRR6 | chlororespiratory reduction 6 | c... 929 0.0
> AT2G47910.1 | Symbols: CRR6 | chlororespiratory reduction 6 |
chr2:19614729-19615769 FORWARD LENGTH=963
Length=963
Score = 929 bits (503), Expect = 0.0
Identities = 670/743 (90%), Gaps = 41/743 (6%)
Strand=Plus/Plus
Query 1 AGCGTCTGTGAATGGCAACAAAGGCAGGTCTTCTCCCGTGGCTTATCCCATCGCCGAGAC 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2 AGCGTCTGTGAATGGCAACAAAGGCAGTTCTTCTCCCGTGGCTTATCCCATCGCCGAGAC 61
Query 61 ACGTGTCGCTGTTCCCAGTGGTTCAATTGCCGGC---GG-GA--------TGGTGTGTAA 108
|||| ||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 62 ACGTATCGCTGTTCCCAGTGGTTCAATTGCCGGCGTTGGAGACCGCCGGGTGGTGTGTAA 121
Query 109 GAAAGAGGAGAGCAGCGGACGTAGCAGTCTCCGTCGCCTTCAATCCTTCTGGCAATTTCG 168
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 GAAAGAGGAGGGCAGAAGACGTAGCAGTCTCCGTCGCCTTCAATCCTTCTGGCAATTTCG 181
Query 169 ACA----T--C-TC-----TG-CC--GA---AGATAAAGTGGAACCTCCGCTGCCTCCGA 210
||| | | || || || || ||||||||||||||||||| ||||||| |
Sbjct 182 ACATCTCTGCCTTCGAGAATGACCAAGATTCAGATAAAGTGGAACCTCCGATGCCTCCAA 241
Query 211 CGACGGGACGGTACGAAGTAGTGGTCGACAACGACTCAATTGGGAGGCTTGACCTATCCC 270
|||| || ||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 242 CGACCGGCCGGTACGAAGTAGTGATCGACAACGACTCAATTGGGCGGCTTGACCTATCCC 301
Query 271 CGTTTCAGAGAGCCACCGGCATAAGCTCACC--------TTCCT-CAGCTGAACCAAAAC 321
||||||||||||||| |||||||| ||| || || | ||||||||||||||
Sbjct 302 CGTTTCAGAGAGCCATCGGCATAACCTCGCCTGATGATTTTGGTGTAGCTGAACCAAAAC 361
Query 322 GGTATTTGGATCGAACCATCGGATTCACCATCAACTACAGGAGAGAAGATCCCGGGGATC 381
|||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct 362 GGTATTTGGATCGAACCATCGGATTCACCATCAATTACAAGAGAGAAGACCCCGGGGATC 421
Query 382 CGCGGGAGCTGTCAGAGTACCCAGACATAAGACTGTGGTTCGTGAGGCTGGACGCGATGT 441
|||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||||||||
Sbjct 422 CGCGGGAGCTGTCAGAGTACCCGGACGTAAGACTATGGTTCGTGAGGCTCGACGCGATGT 481
Query 442 ACCCATGGCTGCCTCTGCTGCTGGACTGGCGAGCTGGAGAGCTTGCTCGATATGCGGCCA 501
|||| ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 482 ACCCTTGGCTGCCTCTGCTGCTGGACTGGCGAGCTGGAGAACTTGCTCGATACGCAGCCA 541
Query 502 TGTTAGTGCCGCACCAGATGAGCTTGAGAATGGGTGTCGTTTTCAATCCGGAGGCGTTGG 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TGTTAGTGCCGCACCAGATGAGCTTGAGAATGGGTGTCGTTTTCAATCCGGAGGCGTTGG 601
Query 562 AGCTTTTCGTGATGAACAAGGTGTTTGTGGTTTATCCGTGGCTGAAACGGCACGGCGTCC 621
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 602 AGCTTTTCGTAATGAACAAAGTGTTTGTGGTTTATCCGTGGCTGAAACGGCACGGCGTCC 661
Query 622 CCAAA-CCCAGGTTGAAGACGAGCGACATGGCCAGGATGCTCGGCTTCGGTATCGGCGAT 680
| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 662 C-AAAGCCCAGGTTGAAGACGAGCGACATGGCCAGGATGCTCGGATTCGGTATCGGCGAT 720
Query 681 GAGCTCTTCGACTTGGTCGATCA 703
||||||||||||||| |||||||
Sbjct 721 GAGCTCTTCGACTTGATCGATCA 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34561093136
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5