BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483986
Length=2156
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47940.1 | Symbols: DEGP2 | DEGP protease 2 | chr2:19617986-... 3234 0.0
> AT2G47940.1 | Symbols: DEGP2 | DEGP protease 2 | chr2:19617986-19622232
REVERSE LENGTH=2278
Length=2278
Score = 3234 bits (1751), Expect = 0.0
Identities = 2036/2164 (94%), Gaps = 57/2164 (3%)
Strand=Plus/Plus
Query 19 TCTCTCTCGCCGGCCGATATGGCCGTCTCCGTAGCAAACTGCAGCTTCTCCGTCCTCAAT 78
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 51 TCTCTCTCGCCGGCCGATATGGCCGCCTCCGTAGCAAACTGCTGCTTCTCCGTCCTCAAT 110
Query 79 GCCTCCGTTAAACTTCAATCTTCATGCGTCTCCTCACCGTGGTGTTTCGTAG-CCGCATC 137
|||||||||||| |||||||||| | | |||||||||||||||||||||| | |||||||
Sbjct 111 GCCTCCGTTAAAATTCAATCTTCGTCCATCTCCTCACCGTGGTGTTTCGT-GTCCGCATC 169
Query 138 -TCAGAAGA-------AG--TCGTTGAATCTTAAGAGGAAATCGTCGAGGTCTGATTCAT 187
|| | || || || | ||| |||||||||||||||||||||||||||||
Sbjct 170 GTC-GTTGACTCCCCGAGCTTCCTCCAATATTAAGAGGAAATCGTCGAGGTCTGATTCAC 228
Query 188 CATCTCCTATATTAAACCCAGAGACCCAGAAGAATTACCCAGGTAGAGTTCGAGATGATA 247
||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
Sbjct 229 CATCTCCTATATTAAACCC--AG----AGAAGAATTACCCAGGTAGAGTTCGAGATGAAA 282
Query 248 GTCCCAATCCTCCTCAAAAAATGGCTTTCAAGGCCTTTGGGTCACCaaaaaaggagaaaa 307
|| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 283 GTTCCAATCCTCCTCAAAAAATGGCTTTCAAGGCTTTTGGGTCACCCAAAAAGGAGAAAA 342
Query 308 aaGAGCCTCTCTCTGATTTTAGTCGAGACCAACAGACTGATCCTGGCAAGATTCACGACG 367
||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 343 AAGAGTCTCTTTCTGATTTTAGTCGAGACCAACAGACTGATCCTGCCAAGATTCACGATG 402
Query 368 CATCTTTTCTCAACGCTGTTGTCAAGGTTTATTGCACTCATACTGCGCCTGATTACTCCC 427
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 403 CATCCTTTCTCAACGCTGTTGTCAAGGTTTATTGCACTCATACTGCTCCTGATTACTCCC 462
Query 428 TCCCATGGCAGAAGCAAAGACAATTTACTAGCACTGGAAGGCATGttttttttATTCACA 487
||||||||||||||||||| ||||||||||| ||||| | | |
Sbjct 463 TCCCATGGCAGAAGCAAAGGCAATTTACTAGTACTGG-A---A-G--------------- 502
Query 488 TTGCTTTTATGATTGGAGATGGCAAGCTCTTGACTAATGCCCATTGTGTCGAACATGATA 547
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 503 -TGCTTTTATGATTGGAGATGGCAAGCTCTTGACCAATGCCCATTGTGTCGAACACGATA 561
Query 548 CACAGGTTAAAGTTAAGAGAAGGGGAGATGATCGAAAGTATGTGGCTAAGGTTTTAGTAA 607
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 562 CACAGGTTAAAGTTAAGAGAAGGGGAGATGATCGAAAGTATGTGGCTAAGGTTTTAGTTA 621
Query 608 GGGGTGTGGACTGTGACATAGCTTTGCTTTCCGTAGAAAGCGAGGATTTCTGGAAAGGAG 667
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 622 GGGGTGTGGACTGTGACATTGCTTTGCTTTCCGTAGAAAGCGAGGATTTCTGGAAAGGAG 681
Query 668 CTGAACCACTGCGGCTGGGCCATTTACCCCGCCTTCAGGATTCAGTAACTGTCGTGGGAT 727
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 682 CTGAACCACTACGGCTGGGCCATTTACCCCGCCTTCAGGATTCAGTTACTGTCGTGGGAT 741
Query 728 ATCCTCTTGGAGGAGATACAATCTCTGTTACAAAAGGGGTTGTATCACGTATAGAGGTAA 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 ATCCTCTTGGAGGAGATACAATCTCTGTTACAAAAGGGGTTGTATCACGTATAGAGGTAA 801
Query 788 CATCATATGCTCATGGATCATCTGACTTGCTTGGAATTCAAATCGACGCTGCAATAAATC 847
|||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 802 CATCTTACGCTCATGGATCATCCGACTTGCTTGGAATTCAAATCGACGCTGCTATAAATC 861
Query 848 CAGGGAATAGTGGTGGCCCTGCATTCAACGACCAGGGGGAATGTATTGGAGTAGCATTCC 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 CAGGGAATAGTGGTGGCCCTGCATTCAACGACCAGGGGGAATGTATTGGAGTAGCATTCC 921
Query 908 AGGTTTACAGATCCGAAGAAACTGAAAATATTGGATATGTAATTCCAACAACCGTTGTTT 967
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 922 AGGTTTACAGATCCGAAGAAACTGAAAATATTGGATATGTGATTCCAACAACCGTTGTTT 981
Query 968 CTCACTTTTTGACTGATTATGAGAGGAACGGAAAGTACACTGGTTACCCTTGCCTTGGAG 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 CTCACTTTTTGACTGATTATGAGAGGAACGGAAAGTACACTGGTTACCCTTGCCTTGGAG 1041
Query 1028 TGTTGCTGCAGAAATTAGAAAATCCAGCTCTGCGGGAGTGCCTCAAAGTTCCTACAAATG 1087
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 TATTGCTGCAGAAATTAGAAAATCCAGCTCTGCGGGAGTGCCTCAAAGTTCCTACAAATG 1101
Query 1088 AGGGGGTACTGGTGCGAAGAGTTGAACCTACATCTGATGCAAGTAAAGTCCTGAAAGAGG 1147
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 AGGGGGTTCTGGTGCGAAGAGTTGAACCTACATCTGATGCAAGTAAAGTCCTGAAAGAGG 1161
Query 1148 GAGATGTGATTGTAAGTTTTGATGATCTACATGTGGGATGTGAAGGAACTGTACCCTTCC 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 GAGATGTGATTGTAAGTTTTGATGATCTACATGTGGGATGTGAAGGAACTGTACCCTTCC 1221
Query 1208 GATCCAGTGAACGCATTGCATTCCGTTATCTCATCAGTCAAAAATTTGCAGGTGATATCG 1267
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 GATCTAGTGAACGCATTGCATTCCGTTATCTCATCAGTCAAAAATTTGCAGGTGATATCG 1281
Query 1268 CTGAGCTTGGTATCATTAGAGCAGGAGAACATAAGAAAGTTCAAGTAGTTCTAAGACCAC 1327
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1282 CTGAGATTGGTATCATTAGAGCAGGAGAACATAAGAAAGTTCAAGTAGTTCTAAGGCCAC 1341
Query 1328 GAGTGCACCTGGTACCGTATCATATTGATGGAGGTCAACCATCATACATTATTGTTGCTG 1387
||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 1342 GAGTGCACCTGGTACCGTACCATATTGATGGAGGTCAGCCATCATACATTATAGTTGCTG 1401
Query 1388 GTTTGGTGTTTACTCCGCTCTCAGAACCCCTGATAGAGGAGGAGTGTGAGGATACCATAG 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 GTTTGGTGTTTACTCCGCTCTCAGAACCCCTGATAGAGGAGGAGTGTGAGGATACCATAG 1461
Query 1448 GCTTGAAATTGTTAACAAAGGCACGCTACTCTGTGGCAAGGTTCAGAGGAGAACAAATCG 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 GCTTGAAATTGTTAACAAAGGCACGCTACTCTGTGGCAAGGTTCAGAGGAGAACAAATCG 1521
Query 1508 TCATCCTATCACAGGTCTTGGCAAATGAAGTAAACATCGGCTATGAGGACATGAATAACC 1567
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 TCATCCTATCACAGGTATTGGCAAATGAAGTAAACATCGGCTATGAGGACATGAATAACC 1581
Query 1568 AACAGGTCCTGAAGTTCAATGGAATTCCTATAAGAAACATCCATCACTTGGCACATCTCA 1627
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1582 AGCAGGTCCTGAAGTTCAATGGAATTCCAATAAGAAACATCCATCACTTGGCACATCTCA 1641
Query 1628 TTGACATGTGCAAAGATAAGTATCTCGTTTTTGAGTTTGAAGACAACTATGTTGCTGTGT 1687
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1642 TTGATATGTGCAAAGATAAGTATCTAGTTTTTGAGTTCGAAGACAACTATGTTGCTGTGT 1701
Query 1688 TGGAGAGAGAAGCTTCAAATTCTGCTTCCTTGTGCATCCTCAAAGATTATGGAATTCCCT 1747
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 TGGAGAGGGAAGCTTCAAATTCTGCTTCCTTGTGCATCCTCAAAGATTATGGAATTCCCT 1761
Query 1748 CGGAAAGATCTGCTGATCTGCTCGAGCCATATGTAGATCCAATAGATGACACCCAAGCGC 1807
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1762 CGGAAAGATCCGCTGATCTGCTCGAGCCATATGTTGATCCAATAGATGACACCCAAGCGC 1821
Query 1808 TTGACCAAGGTATTGGAGACAGCCCTGTGTCAAATCTGGAAATCGGCTTTGATGGACTGG 1867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1822 TTGACCAAGGTATTGGAGACAGCCCTGTGTCAAATCTGGAAATCGGCTTTGATGGACTGG 1881
Query 1868 TGTGGGCATAAA-TGTTCAAAAAAGGCGTCCGCAGATGGAAGCCACAGAAAGCTCATACA 1926
|||||||||||| | ||| |||| ||||||||||||||||| |||| |||||||||||||
Sbjct 1882 TGTGGGCATAAAATATTCGAAAA-GGCGTCCGCAGATGGAAACCACTGAAAGCTCATACA 1940
Query 1927 GCTTCCCCGAATTTATGGGAAAGCTTTCAGCTTTATCCTCATTCAGAAGGTCTTGAGCTG 1986
||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct 1941 GCTTCCCCGAACATATGGGAAAGCTTTCAGCTTCATCCTCATTCATAAGGTCTTGTGCTG 2000
Query 1987 CTC---C--AA-GTTTAGTGAATTCTTTCTTC---A---AAACCTCTAGGGATTGAGTTT 2034
||| | || |||||||||||||||||||| | ||||||||| |||||||||||
Sbjct 2001 CTCAAACTCAAAGTTTAGTGAATTCTTTCTTCTTTATTCAAACCTCTATGGATTGAGTTT 2060
Query 2035 AATAGAAAGTTTGCCATGAGAATGCTTGACCATTGTGTGCAGATGAATGTA--CTGCTAA 2092
||||||||||| |||||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct 2061 AATAGAAAGTTGGCCATGAGAATGCTCGGCCATTGTGTTCAGATGAATGTATACTGCTAA 2120
Query 2093 AAGCATTGCCAGAATCTTGACAAAAAGTCAACAAATTATGCAATGTCTGATTTTTTATGA 2152
||||||||||||||||| ||||||| ||||||||||||| || ||||||||||| |||||
Sbjct 2121 AAGCATTGCCAGAATCTCGACAAAA-GTCAACAAATTATTCAGTGTCTGATTTTCTATGA 2179
Query 2153 GAAA 2156
||||
Sbjct 2180 GAAA 2183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106927160850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5