BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483987
Length=1624
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47960.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 2218 0.0
> AT2G47960.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF974 (InterPro:IPR010378);
Has 285 Blast hits to 284 proteins in 126 species: Archae
- 0; Bacteria - 0; Metazoa - 150; Fungi - 68; Plants -
32; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
| chr2:19625614-19629183 FORWARD LENGTH=1660
Length=1660
Score = 2218 bits (1201), Expect = 0.0
Identities = 1262/1292 (98%), Gaps = 1/1292 (0%)
Strand=Plus/Plus
Query 6 CGC-GACGCATGGACCGCACTCGCTGGCCTTCAGGGTGATGCGACTCTGCAAACCGTCTT 64
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 34 CGCAGACGCATGGACCGCACTCGCTGGCCTTCAGGGTGATGCGACTCTGCAAACCGTCTT 93
Query 65 TCCACGTCGATcccccccTCCGCATTGACCCTTTCGATCTTCTCGCCGGCGAGGATTTCT 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 TCCACGTCGATCCTCCCCTCCGCATTGACCCTTTCGATCTTCTCGCCGGCGAGGATTTCT 153
Query 125 CCGACGATCCCTCTTCCGCCTCCTTGTTCCGCCGCCACGTTTCTTCTGCCGACGCTGTCG 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 154 CCGACGATCCCTCTTCCGCCTCCTTGTTCCGCCGCCACGTATCTTCTGCCGACGCTGTCG 213
Query 185 ACTCCGATCTCAGCTACCGAAATAGATTCCTCCTCAACCATCCTACCGATCCAATCGGTC 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 ACTCCGATCTCAGCTACCGAAATAGATTCCTCCTCAACCATCCTACCGATCCAATCGGTC 273
Query 245 TCTCTGGTCTTCTGCTTCTTCCTCAGTCCTTCGGAGCGATCTATCTCGGAGAAACATTCT 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 TCTCTGGTCTTCTGCTTCTTCCTCAGTCCTTCGGAGCGATCTATCTCGGAGAAACATTCT 333
Query 305 GTAGCTATATCAGCGTCAACAATAGTTCCACTTCAGAAGTTCGGGATGTTACCATTAAGG 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 GTAGCTATATCAGCGTCAACAATAGTTCCACTTCAGAAGTTCGGGATGTTACCATTAAGG 393
Query 365 CAGAAATTCAGACAGAGAGGCAGAGGATCCTACTTCTGGATACATCCAAGTCACCTGTTG 424
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 394 CAGAAATTCAGACAGAGAGGCAGAGGATTCTACTTCTGGATACATCCAAGTCACCTGTTG 453
Query 425 AATCCATACGGACAGGGGGACGCTATGATTTCATAGTGGAACATGATGTCAAAGAGCTTG 484
|||| ||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 454 AATCGATACGGACAGGTGGACGCTATGATTTCATAGTTGAACACGATGTGAAAGAGCTTG 513
Query 485 GAGCTCACACGTTGGTTTGCTCTGCATTGTACAATGACGCTGATGGTGAGCGTAAATATC 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 GAGCTCACACGTTGGTTTGCTCTGCATTGTACAATGACGCTGATGGTGAGCGTAAATATC 573
Query 545 TTCCCCAGTTTTTCAAGTTTGTCGTTGCAAACCCACTTTCAGTCAGGACCAAGGTTCGAG 604
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 574 TTCCCCAGTTTTTCAAGTTTGTCGTTGCAAACCCACTCTCAGTGAGGACCAAGGTTCGAG 633
Query 605 TTGTAAAGGAGACTACATTTTTAGAGGCTTGCATTGAGAACCATACAAAAGCAAACCTCT 664
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TTGTAAAGGAGACGACATTTTTAGAGGCTTGCATTGAGAACCATACAAAAGCAAACCTCT 693
Query 665 TTATGGACCAAGTTGATTTTGAACCTGCTAAGCAATGGAGTGCTGTAAGATTACAGAATG 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 TTATGGACCAAGTTGATTTTGAACCTGCTAAGCAATGGAGTGCTGTAAGATTACAGAATG 753
Query 725 AAGACTCAACAGAAGATACTCCAACCAGTGGACTTAGTGGACTGATACCTAAACCGCCAG 784
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 754 AAGACTCAACAGAAGATCCTCCAACCAGTGGTCTTAGTGGACTGATACCTAAACCGCCAG 813
Query 785 TTATAATCCGATCTGGCGGGGGCATCCACAACTATCTCTACAAGTTAAACCCATCTGCAG 844
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 814 TTATAATCCGATCTGGCGGGGGTATCCACAACTATCTCTACAAGTTAAACCCATCTGCAG 873
Query 845 ATGTTTCCGGGCAAACAAAATTCCAGGGAAGTAATATCCTGGGTAAATTTCAAATAACAT 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 ATGTTTCCGGGCAAACAAAATTCCAGGGAAGTAATATCCTGGGTAAATTTCAAATAACAT 933
Query 905 GGCGCACAAATTTGGGTGAACCTGGTCGCTTACAAACACAACAAATTCTCGGTGCTCCAG 964
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 934 GGCGCACAAATTTGGGTGAACCTGGTCGCTTACAAACACAACAAATTCTCGGCGCTCCAG 993
Query 965 TCAGCCGTAAAGAGATTAATATGCGAGTTGTAGAGGTTCCAGCTGTTATACATTTAAATA 1024
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 994 TAAGCCGTAAAGAGATTAATATGCGAGTTGTAGAGGTTCCAGCTGTTATACACTTAAATA 1053
Query 1025 GACCCTTTCCGGCATACTTGAATCTCACAAACCAAACCGATAGGCAACTGGGACCCTTTG 1084
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1054 GACCCTTTCGGGCATACTTGAATCTCACAAACCAAACTGATAGGCAACTGGGACCCTTCG 1113
Query 1085 AGGTCTCACTGTCACAAGATGAATCACAAATGGAGAAGCCGGTTGGTATTAATGGTCTCC 1144
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1114 AGGTCTCACTGTCACAAGATGAAACACAATTGGAGAAGCCGGTTGGTATTAATGGTCTCC 1173
Query 1145 AGACTCTGATGTTACCCAGGATTGAGGCATTTGGCTCCAATGATTTCCAATTGAATCTTA 1204
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1174 AGACTCTGATGTTACCCAGGATTGAAGCATTTGGCTCCAATGATTTCCAATTGAATCTTA 1233
Query 1205 TTGCCTCCAAGCTGGGAGTCCAGAAAATATCTGGGATCACAGCCTTGGACACGAGAGAGa 1264
|||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 1234 TTGCCTCCAAGCTGGGAGTCCAGAAAATCGCTGGGATCACGGCCTTGGACACAAGAGAGA 1293
Query 1265 aaaaaaCCTACGAACTTGTTCCCGAGATGGAG 1296
|||||||||||||||||||||| || ||||||
Sbjct 1294 AAAAAACCTACGAACTTGTTCCAGATATGGAG 1325
Score = 272 bits (147), Expect = 7e-72
Identities = 271/325 (83%), Gaps = 32/325 (10%)
Strand=Plus/Plus
Query 1331 AGATATTTGTAGAGTCAGGCTAAGTTTTAAGACAGCCTCCCCGAGTGGTGTTCTTCCTCC 1390
|||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1324 AGATATTTGTAGAGACAGACTAAGTTATAAGACAGCCTCCCCGAGTGGTGTTCTTCCTCG 1383
Query 1391 ACAGGTTTTGTTATTGCACCT-C-CTGTG-T-TCAAtttttttttGTTTCTTAGTAAAAA 1446
||||||||||||||||||||| | ||||| | | || || |||||||||||||||| |||
Sbjct 1384 ACAGGTTTTGTTATTGCACCTCCTCTGTGTTGTTAA-TTGTTTTTGTTTCTTAGTAGAAA 1442
Query 1447 ATAATTTGGCT-CTTTGTAGAAGAAGaaaaaaaCTAAACGGCTTTAACATGTGTAATACG 1505
||||||||||| |||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 1443 ATAATTTGGCTCCTTTGTAGAAGAAGAAAAAAACTAAACGGCTTTAACATATGGACTACG 1502
Query 1506 CCGTTTGTAT-TT------AC------T-----GTT--TG----ATCAA-ATGTTAATTG 1540
|||||||||| || || | ||| || ||||| |||||||||
Sbjct 1503 CCGTTTGTATCTTGTTGTTACAAACCATTAAACGTTACTGTTTGATCAATATGTTAATTC 1562
Query 1541 AAAACTGTTTGGTTTAAAGAAGAACTATTGAAGTCAACTA-TGTACAACTTACAATCTTT 1599
| ||||||||||||||||| | || |||||||||| | | || ||||||| ||||||||
Sbjct 1563 AGAACTGTTTGGTTTAAAGCATAAGTATTGAAGTCGTCAAATGAACAACTTGCAATCTTT 1622
Query 1600 TGCTTTGTCTGAGATGCAAATAAAA 1624
|||||||| |||||| |||||||||
Sbjct 1623 TGCTTTGTATGAGATACAAATAAAA 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80220470910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5