BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483989
Length=1376
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47970.1 | Symbols: | Nuclear pore localisation protein NPL... 2071 0.0
AT3G63000.1 | Symbols: NPL41 | NPL4-like protein 1 | chr3:23283... 926 0.0
> AT2G47970.1 | Symbols: | Nuclear pore localisation protein NPL4
| chr2:19629474-19631182 FORWARD LENGTH=1502
Length=1502
Score = 2071 bits (1121), Expect = 0.0
Identities = 1240/1298 (96%), Gaps = 5/1298 (0%)
Strand=Plus/Plus
Query 1 TTTGGGGGAAAGAAGAAAGGAGGAGGAAGACGATGATGCTCAGAATCCGAAGCAGAGATG 60
||||||||||||||||||| |||| || || |||||||||||||||||||||||||||||
Sbjct 23 TTTGGGGGAAAGAAGAAAGAAGGAAGACGATGATGATGCTCAGAATCCGAAGCAGAGATG 82
Query 61 GACTGGAGCGAGTCACAGCCGAGGGAGCTCATATAACTGTTTCCCAGCTCAAAACCTTAA 120
|||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 83 GACTGGAGAGAGTCACAGCGGAGGGAGCTCATATCACTGTTTCCCAGCTCAAAACCTTGA 142
Query 121 TCGAGGATCAGCTTCAGATCCCTCTCCATAAGCAGACCTTATCTACCAATCGTGATCTCC 180
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 143 TCGCGGATCAGCTTCAGATCCCTCTCCATAAGCAGACCTTATCCACCAATCGTGATCTCC 202
Query 181 TCCTCGCCAAAACTCCCGCTGATCTACTCGCCTCCACCGACCTCACCGACCCAAACCTCC 240
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 203 TCCTCGCCAAAACTCCCGCTGATCTACTCGCCTTCACCGACCTCACGGACCCAAACCTCC 262
Query 241 CCCTCTCCTCTCTCAATCTCGGGCATGGCTCTATGCTCTTCCTCGCCTACGATGGGGAGC 300
|||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 263 CCCTCTCCTCTCTCAACCTCGGCCATGGCTCTATGCTCTACCTCGCCTACGATGGCGAGC 322
Query 301 GCTCCATTCCTGGAGCTCCTCCCGCCACTCCTGCCGGATCCTTCGGCAGGAAGATGACCG 360
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 323 GCTCCATTCCTGGAGCTCCTCCCGTTACTCCTGCCGGATCCTTCGGGAGGAAGATGACCG 382
Query 361 TCGATGACTTGATCGCCCGCCAGATGCGCGTTACTCGTCAGGAGACGTCTCACTGCGACT 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 383 TCGATGACTTGATCGCCCGCCAGATGCGCGTCACTCGTCAGGAGACGTCTCACTGCGACT 442
Query 421 CCGTCTCCTTCGATCGCGATTG-CGCCAACGCCTTCCAGCACTACGTCAACGATTCTCTA 479
||||||||||||||||||| || ||||||||| ||||||||||||||||| || ||||||
Sbjct 443 CCGTCTCCTTCGATCGCGA-TGCCGCCAACGCTTTCCAGCACTACGTCAATGAGTCTCTA 501
Query 480 GCTTTTGCCGTCAAGCGCGGCGGCTTTATGTACGGCACCGTCACGGAGGGAGGACAGGTG 539
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 502 GCTTTTGCCGTCAAGCGCGGCGGCTTTATGTACGGCACCGTCACCGAGGAAGGACAGGTG 561
Query 540 GAAGTTGATTTCATCTACGAGCCGCCGCAGCAAGGCACGGAGGCTAATCTTATTCTGATG 599
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 562 GAAGTTGATTTCATTTACGAGCCGCCCCAGCAAGGCACGGAGGCTAATCTTATTCTGATG 621
Query 600 AGAGATGCCGATGAAGAGAAGCGCGTGGACGCAATCGCCATGGGCCTGGGGATGAGGAAG 659
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 622 AGAGATGCTGATGAAGAGAAGCGCGTGGACGCAATCGCCATGGGCTTGGGGATGAGGAGG 681
Query 660 GTCGGTTTCATTTTTAACCAGACCGTGTTGCAGGACAAGACTGAATACACTCTGTCCAAC 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 682 GTCGGTTTCATTTTTAACCAGACCGTGGTGCAGGACAAGACTGAATACACTCTGTCCAAC 741
Query 720 GCCGAGGTGCTACAGGCGGCGGAGCTTCATGCCGAGGGCGAGCTGCAGGAGTGGGTCACG 779
||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||
Sbjct 742 GCCGAGGTGCTACAGGCGGCGGAGCTTCACGCCGAGAGCGAGCTGAAGGAGTGGGTCACG 801
Query 780 GCGGTGGTGAAGCTTGAGGTGAATGAGGATGGTGGCGCCGATGTCCATTTCGAGGCGTTT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GCGGTGGTGAAGCTTGAGGTGAATGAGGATGGTGGCGCCGATGTCCATTTCGAGGCGTTT 861
Query 840 CAGATGAGTGATATGTGCATCAGGCTTTTCAAGGAAGAGTGGTTCGAGACGGAGATTATG 899
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 862 CAAATGAGTGATATGTGCATCAGGCTGTTCAAGGAAGAGTGGTTCGAGACGGAGATTATG 921
Query 900 CCCGACGATGATCCAAAGCTCTCTAAGATGAAGAAGGAGGTGGTTGTTGGTGTCAAGGAT 959
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 922 CCGGACGATGATCCAAAGCTCTCTAAGATGAAGAAGGAGGTGGTTGTTGGTGTGAAGGAT 981
Query 960 CTTAAGGAGGTGGATAACGATTTCTTCCTCGTTCTGGTCAGGATCTTGGATCACCAGGGA 1019
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 982 CTTAAGGAGGTAGATAACGATTTCTTCCTCGTTCTCGTCAGGATCTTGGATCACCAGGGG 1041
Query 1020 CCCCTGTCATCAACATTCCCAATAGAGAACCGGAGCAGTCGAGCAACGATGCGGGATCTG 1079
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1042 CCTCTGTCATCAACATTCCCAATAGAGAACCGGAGCAGTCGAGCAACGATGCGGGCTCTA 1101
Query 1080 AAAACACATCTGGACCGGGCAAAGAGCTTGCCGTTGGTGAAGAAGATGTCAGATTTTCAT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 AAAACACATCTGGACCGGGCAAAGAGCTTGCCGTTGGTGAAGAAGATGTCAGATTTTCAT 1161
Query 1140 CTGCTTCTCTTTGTGGCTCAGTTTCTGGACGTGTCATCGGACGTCCCTGCCATAGCTGAG 1199
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1162 CTGCTTCTCTTTGTGGCTCAGTTTCTGGACGTGTCATCGGACGTCCCTGCTTTAGCCGAG 1221
Query 1200 TGTGTGCGTCTGCAGTCGCCTGTTCCAGAGGGCTATGCGTTGCTCATCGAATCAATGGCC 1259
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1222 TGTGTGCGTCTGCAGTCGCCTGTCCCAGAGGGCTATGCGTTGCTCATCGAATCAATGGCC 1281
Query 1260 AATACTTGTTAACTTTT-TATCAT-GTTCGTTTAGTTC 1295
|| ||||||||| |||| | |||| ||| ||| ||||
Sbjct 1282 AACACTTGTTAATTTTTGTGTCATTGTTT-TTTGGTTC 1318
> AT3G63000.1 | Symbols: NPL41 | NPL4-like protein 1 | chr3:23283609-23285540
FORWARD LENGTH=1652
Length=1652
Score = 926 bits (501), Expect = 0.0
Identities = 1008/1255 (80%), Gaps = 26/1255 (2%)
Strand=Plus/Plus
Query 35 GATGCTCAGAATCCGAAGCAGAGATGGACTGGAGCGAGTCACAGCCGAGGGAGCTCATAT 94
|||||||||| ||||||||||||||||| ||||| |||| | | || ||| |||||||
Sbjct 233 GATGCTCAGAGTCCGAAGCAGAGATGGATTGGAGAGAGTGAGTGTAGATGGACCTCATAT 292
Query 95 AACTGTTTCCCAGCTCAAAACCTTAATCGAGGATCAGCTTCAGATCCCTCTCCATAAGCA 154
|| || ||||| ||||||||| ||||| | |||||||||||||||||| |||| || ||
Sbjct 293 CACAGTCTCCCAACTCAAAACCCTAATCCAAGATCAGCTTCAGATCCCTATCCACAACCA 352
Query 155 GACCTTATCTACCAATCGTGATCTCCTCCTCGCCAA-AACTCCCGCTGATCTACTCGCCT 213
|||||||| |||||| | | || |||||||| || | | || ||||| | || || |
Sbjct 353 AACCTTATCCACCAATAGAAACCTTCTCCTCGCTAAGAGC-CCTTCTGATTTCCTAGCGT 411
Query 214 CCACCGACCTCACCGACCCAAACCTCCCCCTCTCCTCTCTCAATCTCGGGCATGGCTCTA 273
||||||| | |||| || ||||||| |||| ||||||||||| | || |||||||
Sbjct 412 TCACCGACATGGCCGATCCTAACCTCCGAATCTCGTCTCTCAATCTAGCTCACGGCTCTA 471
Query 274 TGCTCTTCCTCGCCTACGATGGGGAGCGCT-CCATTCCTGGAGCTCCTCCCGCCACTCCT 332
|| ||| ||| || ||||| || ||||| | | |||| ||| | |||| | | || |||
Sbjct 472 TGGTCTACCTTGCTTACGAAGGTGAGCG-TACGATTCGTGGTGGTCCTGCTGTAACGCCT 530
Query 333 GCCGGATCCTTCGGCAGGAAGATGACCGTCGATGACT-TGATCGCCCGCCAGATGCGCGT 391
|| || |||||||| ||||||||||||||||| || | | ||||| || |||||||||||
Sbjct 531 GCTGGTTCCTTCGGGAGGAAGATGACCGTCGAAGA-TCTAATCGCTCGACAGATGCGCGT 589
Query 392 TACTCGTCAGGAGACGTCTCACTGCGACTCCGTCTCCTTCGATCGCGATTGCGCCAACGC 451
||| ||||||| | |||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 590 CGGTCGCCAGGAGAAGGCTCACTGCGATTCCGTCTCGTTCGATCGCGATTGCGCCAATGC 649
Query 452 CTTCCAGCACTACGTCAACGATTCTCTAGCTTTTGCCGTCAAGCGCGGCGGCTTTATGTA 511
|| ||||| | ||||||||| || || || || || ||||| ||||| || || |||||
Sbjct 650 GTTTCAGCATTTCGTCAACGAGTCGCTTGCCTTCGCTGTCAAACGCGGTGGATTCATGTA 709
Query 512 CGGCACCGTCACGGAGGGA-GGACAGGTGGAAGTTG-ATTTCATCTACGAGCCGCCGCAG 569
||| | |||| | || ||| || ||||| | || || |||||||||||||||| ||||||
Sbjct 710 CGGGAACGTCTCTGA-GGATGGTCAGGTTG-AGGTGAATTTCATCTACGAGCCACCGCAG 767
Query 570 CAAGGCACGGAGGCTAATCTTATTCTGATGAGAGA-TGCCGATGAAGAGAAGCGCGTGGA 628
||||| | ||||| |||||| |||||||||||||| | | || |||||||| || || ||
Sbjct 768 CAAGGGATGGAGGATAATCTGATTCTGATGAGAGACT-CTGAGGAAGAGAAACGTGTTGA 826
Query 629 CGCAATCGCCAT-GGGCCTGGGGATGAGGA-AGGTCGGTTTCATTTTTAACCAGACCGTG 686
|| || || | ||| | |||||||||| || | ||||| || || |||||||| |||
Sbjct 827 TGCTATTGCTTTAGGG-TTAGGGATGAGGAGAGTTGGGTTT-ATATTCAACCAGACTGTG 884
Query 687 -TTGCAGGACAAGACTGAATACACTCTGTCCAACGCCGAGGTGCTACAGGCGGCGGAGCT 745
| |||||||||| || |||||| |||| |||| |||||| | | ||||| ||||
Sbjct 885 ACT-CAGGACAAGAAGGAGTACACTTTGTCTAACGTTGAGGTGTTGCTTGCGGCTCAGCT 943
Query 746 TCATGCCGAGGGCGAGCTGCAGGAGTGGGTCACGGCGGTGGTGAAGCTTGAGGTGAATGA 805
||| || ||| |||| || ||||||||||||| || || |||||||||||| | |||||
Sbjct 944 TCACGCTGAGAGCGAATTGAAGGAGTGGGTCACTGCTGTTGTGAAGCTTGAGATCAATGA 1003
Query 806 GGATGGTGGCGCCGATGTCCA-TTTCGAGGCGTTTCAGATGAGTGATATGTGCATCAGGC 864
||||||||| || ||||| || ||| ||| ||||||||||||||||||||||| | |||
Sbjct 1004 GGATGGTGGTGCTGATGTTCACTTT-GAGCCGTTTCAGATGAGTGATATGTGCGTTAGG- 1061
Query 865 TT-TTCAAGGAA-GAGTGGTTCGAGACGGAGATTATG-CCCGACGATGATCCAAAGCTCT 921
|| || |||||| || ||||||||||| |||||| | || || |||||||| |||||||
Sbjct 1062 TTGTTTAAGGAAGGA-TGGTTCGAGACTGAGATT-GGACCTGAGGATGATCCCAAGCTCT 1119
Query 922 CTAAGATGAAGAAGGAGGTGGTTGTTGGTGTCAAGGATCTTAAGGAGGTGGATAACGATT 981
| ||| ||||||| ||||| |||||||| ||||||||| |||| || || ||||| ||||
Sbjct 1120 CCAAGTTGAAGAAAGAGGTTGTTGTTGGAGTCAAGGATGTTAAAGAAGTCGATAATGATT 1179
Query 982 TCTTCCTCGTTCTGGTCAGGATCTTGGATCACCAGGGACCCCTGTCATCAACATTCCCAA 1041
||||||| ||||| |||| |||||||||||| |||||||| |||| | || ||||| |
Sbjct 1180 TCTTCCTTGTTCTCGTCAAGATCTTGGATCATCAGGGACCGTTGTCGTGTACCTTCCCGA 1239
Query 1042 TAGAGAACCGGAGCAGTCGAGCAACGATGCGGGATCTGAAAACACATCTGGACCGGGCAA 1101
|||||||| ||| || || | |||| ||||||| | ||||||| ||| |||| || ||||
Sbjct 1240 TAGAGAACAGGAACACTCAAACAACAATGCGGGCTTTGAAAACGCATATGGAGCGAGCAA 1299
Query 1102 AGAGCTTGCCGTTGGTGAAGAAGATGTCAGATTTTCATCTGCTTCTCTTTGTGGCTCAGT 1161
|||| | || || ||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 1300 GGAGCCTCCCATTCGTGAAGAGGATCTCTGATTTTCATCTGCTTCTCTTTGTGGCTCAGT 1359
Query 1162 TTCTGGACGTGTCATCGGACGTCCCTGCCATAGCTGAGTGTGTGCGTCTGCAGTCGCCTG 1221
|||| ||||| ||||| ||||||||||| | ||||| || || ||||| ||||| | ||
Sbjct 1360 TTCTAGACGTATCATCCGACGTCCCTGCGTTGGCTGAATGCGTCCGTCTACAGTCTCATG 1419
Query 1222 TTCCAGAGGGCTATGCGTTGCTCATCGAATCAATGGCCAATACTTGTTAACTTTT 1276
| || ||||| |||| |||||||||||| || ||||||||||||| |||| ||||
Sbjct 1420 TCCCTGAGGGATATGAGTTGCTCATCGACTCCATGGCCAATACTTCTTAAGTTTT 1474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67770735750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5