BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483991
Length=1739
Score E
Sequences producing significant alignments: (Bits) Value
AT2G48020.2 | Symbols: | Major facilitator superfamily protein... 2549 0.0
> AT2G48020.2 | Symbols: | Major facilitator superfamily protein
| chr2:19644255-19647180 FORWARD LENGTH=1751
Length=1751
Score = 2549 bits (1380), Expect = 0.0
Identities = 1547/1623 (95%), Gaps = 29/1623 (2%)
Strand=Plus/Plus
Query 128 AGGCTTCGTCTCTTTTGCAA-TTTTGAGTTAGCCAAGTGCTCAAGGGAGATACATAATAC 186
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGGCTTCGTCTCTTTTGCAATTTTTGAGTTAGCCAAGTGCTCAAGGGAGATACATAATAC 180
Query 187 CTGAAGATGTCAAAGGCAAAAAGTGATGCCGTCAGAGAACCATTGGTGGACAAGAATATG 246
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTGAAGATGTCCAAGGC---AAGTGATGCCGTCAGAGAACCATTGGTGGACAAGAATATG 237
Query 247 GCTGGATCAAAACCAGACCAGCCGTGGATGGTTTATCTCAGCACATTTGTTGCGGTCTGT 306
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 GCTGGATCAAAACCAGACCAGCCGTGGATGGTTTATCTCAGCACATTCGTTGCGGTCTGT 297
Query 307 GGTTCTTTTGCGTTTGGTTCTTGTGCGGGATACTCTTCACCTGCTCAGGCTGCAATTAGG 366
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GGTTCTTTTGCGTTCGGTTCTTGTGCGGGATACTCTTCACCTGCTCAGGCTGCAATTAGG 357
Query 367 AATGACCTTTCACTGACTATAGCTGAGTTTTCACTCTTTGGCTCTTTGCTAACTTTTGGC 426
|||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 358 AATGACCTTTCATTGACTATAGCTGAGTTTTCACTCTTTGGTTCTTTACTAACTTTTGGC 417
Query 427 GCAATGATTGGCGCTATAACAAGCGGGCCTATAGCTGATTTGGTTGGAAGAAAGGGGGCG 486
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 418 GCAATGATCGGTGCTATAACAAGCGGGCCTATAGCTGATTTAGTTGGAAGAAAGGGGGCG 477
Query 487 ATGAGAGTTTCCTCTGCATTTTGTGTAGTCGGGTGGCTAGCAATCTTCTTTGCCAAGGGA 546
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 478 ATGAGAGTTTCCTCTGCATTTTGTGTAGTCGGGTGGCTAGCAATCATCTTTGCCAAGGGA 537
Query 547 GTAGTGGCTCTGGACCTCGGAAGACTGGCAACGGGATATGGAATGGGAGCATTCTCCTAT 606
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 GTAGTGGCTCTGGACCTTGGAAGACTGGCAACGGGATATGGAATGGGAGCATTTTCCTAT 597
Query 607 GTGGTACCAATCTTTATAGCCGAAATTGCACCTAAAACTTTCCGAGGGGCTCTAACCACA 666
||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 598 GTGGTGCCAATCTTTATAGCAGAAATTGCACCTAAAACTTTCAGAGGGGCTCTAACCACA 657
Query 667 CTGAACCAGATTTTGATCTGCACTGGAGTGTCGGTTTCCTTCATCATAGGCACACTAGTG 726
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTGAACCAGATTCTGATCTGCACTGGAGTGTCGGTTTCCTTCATCATAGGCACACTAGTG 717
Query 727 ACGTGGAGAGTCTTAGCATTGATAGGAATCATCCCATGCGCTGCCTCCTTTCTTGGCCTC 786
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 718 ACGTGGAGAGTCTTGGCATTAATAGGAATCATCCCATGCGCTGCCTCCTTCCTTGGCCTC 777
Query 787 TTTTTTATCCCTGAGTCTCCAAGATGGTTGGC-AAAGATGGGGCGTGATTCGGAGTTTGA 845
||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||
Sbjct 778 TTTTTTATCCCTGAGTCTCCAAGATGGCTGGCAAAAG-TGGGGCGTGATACGGAGTTTGA 836
Query 846 AGCTTCACTGAGGAAGCTCCGTGGGAAGAAGGCTGATATTTCGCAGGAGGCAGCAGAGAT 905
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 837 AGCTGCACTGAGGAAGCTCCGTGGGAAGAAGGCTGATATTTCGGAGGAGGCAGCAGAGAT 896
Query 906 TCAGGATTATATCGAAACTCTGGAAAGGCTACCGAAAGCCAAGATGCTGGATTTGTTTCA 965
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CCAGGATTATATCGAAACTCTGGAAAGGCTACCGAAAGCCAAGATGCTGGATTTGTTTCA 956
Query 966 GAGGAGATACATACGCTCTGTTCTTATAGCTTTTGGGTTGATGGTGTTTCAGCAGTTTGG 1025
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 957 GAGGAGATACATACGCTCTGTTCTTATAGCTTTCGGGTTGATGGTGTTTCAGCAGTTTGG 1016
Query 1026 AGGAATCAACGGAATATGTTTCTACACAAGCTCGATATTTGAGCAAGCAGGTTTTCCCAC 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AGGAATCAACGGAATATGTTTCTACACAAGCTCGATATTTGAGCAAGCAGGTTTTCCCAC 1076
Query 1086 AAGACTTGGGATGATAATATACGCTGTTCTTCAGGTGGTAATCACTGCGCTTAATGCACC 1145
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AAGACTTGGGATGATAATATATGCTGTTCTTCAGGTGGTAATCACTGCGCTTAATGCACC 1136
Query 1146 GATAGTTGACAGAGCCGGAAGAAAACCGTTGCTACTGGTTTCTGCAACAGGGTTAGTGAT 1205
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1137 GATAGTTGACAGAGCCGGAAGAAAACCATTGCTACTGGTTTCTGCAACAGGGTTAGTGAT 1196
Query 1206 AGGCTGTTTGATAGCAGCGGTCTCTTTCTATCTCAAGGTTCACGACATGGCACGCGAAGC 1265
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 1197 AGGCTGTTTGATAGCAGCGGTTTCTTTCTATCTCAAGGTTCACGACATGGCGCACGAAGC 1256
Query 1266 AGTCCCAGTCCTGGCTGTTGTTGGTATAATGGTGTACATAGGATCGTTTTCAGCAGGAAT 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AGTCCCAGTCCTGGCTGTTGTTGGTATAATGGTGTACATAGGATCGTTTTCAGCAGGAAT 1316
Query 1326 GGGGGCAATGCCGTGGGTGGTCATGTCTGAGATATTTCCCATAAACATAAAAGGAGTAGC 1385
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GGGAGCAATGCCGTGGGTGGTCATGTCTGAGATATTTCCCATAAACATAAAAGGAGTAGC 1376
Query 1386 AGGAGGCATGGCGACGCTGGTGAACTGGTTTGGAGCGTGGGCTGTTTCTTACACTTTCAA 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AGGAGGCATGGCGACGCTGGTGAACTGGTTTGGAGCGTGGGCTGTTTCTTACACTTTCAA 1436
Query 1446 CTTCTTCATGTCCTGGAGCTCTTACGGTACTTTCCTCATTTACGCTGCCATCAACGCGCT 1505
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1437 CTTCCTCATGTCCTGGAGCTCTTACGGAACTTTCCTCATTTACGCTGCCATCAACGCGCT 1496
Query 1506 GGCCATTGTCTTCGTCATTGCCATCGTACCTGAAACGAAAGGGAAGACATTGGAGCAGAT 1565
||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 1497 GGCCATTGTCTTCGTCATTGCCATCGTGCCTGAGACAAAAGGGAAGACATTGGAGCAGAT 1556
Query 1566 CCAAGCCGTAGTCAATCCATAGCTCAAACACATGTTATTATTTCCTAGATGTTTCGTGTC 1625
|||||| ||||||||||||||||||||||| | | |||||||||| ||| ||
Sbjct 1557 CCAAGCTATAGTCAATCCATAGCTCAAACAC-T-T--------CCTAGATGTT-CGTTTC 1605
Query 1626 TATT--C-A-CTTGGGACATTAAGTAGCAATCTTGAATCTCTTTGCTTTTAAGATTCTTT 1681
|||| | | || ||||||| || | ||||||||| ||||||||||||||| ||||||||
Sbjct 1606 TATTAGCCAGCT-GGGACATAAATT-GCAATCTTGGATCTCTTTGCTTTTATGATTCTTT 1663
Query 1682 ACTTG-G---A-TTGTTATCAATCTCTCTATTTCTAATGTCTTCTTATTGAGCTTTGGAC 1736
||| | | | ||||||||| |||||||||||||||| |||||||| ||| ||||||||
Sbjct 1664 ACT-GAGTTCAATTGTTATCACTCTCTCTATTTCTAATCTCTTCTTAATGAACTTTGGAC 1722
Query 1737 TTC 1739
|||
Sbjct 1723 TTC 1725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85993533585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5