BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483994
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
AT2G48060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1188 0.0
> AT2G48060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm
cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes
- 105 (source: NCBI BLink). | chr2:19651196-19662617 REVERSE
LENGTH=7984
Length=7984
Score = 1188 bits (643), Expect = 0.0
Identities = 655/661 (99%), Gaps = 0/661 (0%)
Strand=Plus/Plus
Query 1 ATGTATAGCAGTGGTAACCCGACAAACATTGCCAATCCGATAAAAGATGCGAGCGTTCAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6670 ATGTATAGCAGTGGTAACCCGACAAACATTGCCAATCCGATAAAAGATGCGAGCGTTCAG 6729
Query 61 ATCGATTTAAAAACAGTTGGTGGAAAGCTTACTTTGTACCAAACGACCCTATGCGAGAGA 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6730 ATTGATTTAAAAACAGTTGGTGGAAAGCTTACTTTGTACCAAACGACCCTATGCGAGAGA 6789
Query 121 ATCTCAGGAGATAACATTGATCTCGGGCTAGATCTCGGGTCTCAAAGCTTTTTGCCAACA 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6790 ATCTCAGGGGATAACATTGATCTCGGGCTAGATCTCGGGTCTCAAAGCTTTTTGCCAACA 6849
Query 181 TACAACAAAAATGACATCCAGCTGATATGCTGTCAAGCTGATGCAAGTGTTTTATGGCTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6850 TACAACAAAAATGACATCCAGCTGATATGCTGTCAAGCTGATGCAAGTGTTTTATGGCTT 6909
Query 241 GTCCCTGACACAGTTGTGACCAGATTTATTCAATCCCTTGACTGGGACACAGATATGGAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6910 GTCCCTGACACAGTTGTGACCAGATTTATTCAATCCCTTGACTGGGACACAGATATGGAC 6969
Query 301 ATCACCTTTACTTGGGTTCTTAACAGAGACCGCCCTAAAGGCAAGGAGACTGTGAAATAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6970 ATCACCTTTACTTGGGTTCTTAACAGAGACCGCCCTAAAGGCAAGGAGACTGTGAAATAT 7029
Query 361 GAAAGAAGTGTCGACCCTCTGGACCTTCCAAAACGCTCTGATGTCCAAATGGTTCTCAAT 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 7030 GAAAGAAGTGTCGACCCTCTGGACCTTCCAAAACGCTCTGATATCCAAATGGTTCTCAAT 7089
Query 421 GGGTCGATGGATGGATTTAGGGTGCATAATTTGTACCCAAAGTTCTTCCGTGTTACTGGT 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 7090 GGGTCGATGGATGGATTTAGAGTGCATAATTTGTACCCAAAGTTCTTCCGTGTTACTGGT 7149
Query 481 TCTGGTGATGTCAGGTCTTTCGAGGATCAGACGGATGAAGTGAGTGCAGACATACTCATT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7150 TCTGGTGATGTCAGGTCTTTCGAGGATCAGACGGATGAAGTGAGTGCAGACATACTCATT 7209
Query 541 AACCATGCAGATTTCAAGTGGTGGTGGTCATTTCATAATCTTAAAGCGTCTGAAAATATC 600
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 7210 AACCATGCAAATTTCAAGTGGTGGTGGTCATTCCATAATCTTAAAGCGTCTGAAAATATC 7269
Query 601 AGCGCTTGCGAGGGGATGGATGGACCAGTTGCTATCATAATGTCTGAGGAAACACCGCCA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7270 AGCGCTTGCGAGGGGATGGATGGACCAGTTGCTATCATAATGTCTGAGGAAACACCGCCA 7329
Query 661 C 661
|
Sbjct 7330 C 7330
Score = 693 bits (375), Expect = 0.0
Identities = 485/534 (91%), Gaps = 23/534 (4%)
Strand=Plus/Plus
Query 664 GTGGGGCGTTTCATCAGGCTTCAATGCTCTGACCTGCGTATGAGAATACCGTACGAGAAC 723
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 7399 GTGGGGCGTTTCATCAGGCTTCAATGCTCTGACCTGCGTATGAGAATACCTTACGAGAAC 7458
Query 724 CTGCCTTCGTGTGACAGATTAATAGCCATATGCGAGGACTTGTACGCGGCGAGAGCAGAG 783
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 7459 CTGCCTTCGTGTGACAGATTAATAGCCATATGCGAGGACTTGTACGCGGCTAGAGCAGAG 7518
Query 784 GGTGAGCTTGGAGTAGAAGAAGTTCTATACTGGACGCTTGTGAAGATCTATAGATCCCCA 843
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7519 GGTGAGCTTGGAGTAGAAGAAGTTCTATACTGGACGCTTGTGAAGATCTATAGATCCCCG 7578
Query 844 CACATGCTGCTCGAGTATACAAAGCTAGACTATGATGCTTAGGTCCAA--CCAGTCTCTC 901
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 7579 CACATGCTGCTCGAGTATACAAAGCTAGACTATGATGCTTAGGTCCAAAACCAGTCTCTC 7638
Query 902 ACACTATAGAAACACTTTGTCATATTTGTACATACTGAGCGGAATATTCTGAGGGATATA 961
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 7639 ACACTAAAGAAACACTTTGTCATATTTGTACATACTGAGCGGAATATTCTGAGGGATTTG 7698
Query 962 tttt-ttttCA-TCATCTTGTAGTTGATTATTGTAGTTGTGACATAATGAAAAGAGGAGA 1019
|||| |||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 7699 TTTTGTTTTCAATCAGCTTGTAGTTGATTATTGTAGTTGCGACATAATGAAAAGAGGAGA 7758
Query 1020 AATGTCAAAGATGGGTTCATA-A-GCATTCCACATTCAGAAGTCCAACCTCCTAAAAGAC 1077
|||| | ||||||||||| | | ||||||||||||||||||||||| ||||||||||||
Sbjct 7759 AATG--AGAGATGGGTTCAAAGAAGCATTCCACATTCAGAAGTCCAATCTCCTAAAAGAC 7816
Query 1078 TAAACCAGCTAGA--GCCTAGAG-ATACCCCCGCCGGACCCATCCGAGACGATGGGCCTA 1134
||||||||| | | | |||| | || ||| || |||||||||||||||||| |
Sbjct 7817 TAAACCAGCCAAAATGAAAAGAGGAGACAGA-GCC--ACACATCCGAGACGATGGGCCGA 7873
Query 1135 AA-ATA-ATTG-A-A-T--AATG-GG-CCGCGGCCCACTATTAAATAATCATCC 1179
|| | | || | | | | |||| || ||| |||||| ||||||||||||||||
Sbjct 7874 AACACACATAGTATAATTGAATGTGGGCCGTGGCCCAATATTAAATAATCATCC 7927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57931428930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5