BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483999

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G48075.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...  1037    0.0  


> AT2G48075.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G63050.1); 
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI 
BLink). | chr2:19663916-19664767 REVERSE LENGTH=852
Length=852

 Score = 1037 bits (561),  Expect = 0.0
 Identities = 630/663 (95%), Gaps = 6/663 (1%)
 Strand=Plus/Plus

Query  1    AAGAGTAGAATCAAAGCAAACCCGATAT-CCTACTACTCATTTCTTCATATACACCAAAA  59
            ||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct  10   AAGCGTAGAATCAAAGCAAACCCGATATACC-ACTACTCATTTCTTCATATACACCAAAA  68

Query  60   CCACTCCTCAAGCACAAGAATCCTGGAGAGAAAAGAAAAATACTTTTCTGTTTCTGCAGT  119
            ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct  69   CCACTCCTCAAGCACAATAATCCTGGAGAGAAAAGAAAAATACCTTTCTGTTTCTGCAGT  128

Query  120  CTTCTTTTTGACAGAGAATGCACAGAAGAGAGGATGATGACAGCAGCAGCTCCCTGCGGC  179
            |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||
Sbjct  129  CTTCTTTTTGACAGAGAATGCACATAAGAGAGGATGATGACAGCATCAGCTCTCTGCGGC  188

Query  180  CTCGGGGCATTTGCCGTCGGCTGCTTCGATTTGTTGTGGCTAAACTATGGATATTAGGAG  239
            ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct  189  CTCGGGGCATTTGCCGTCGGCTGTTTCGATTTGTGGTGGCTAAACTATGGATATTAGGAG  248

Query  240  AGAAAGAGATGAATGAAGATAAGCCTGAGAGGAACAAACTAATCAAGAAGGGATCAATGT  299
            | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  249  ACAAAGAGATGAATGAAGATAAGCCTGAGAGGAACAAACTGATCAAGAAGGGATCAATGT  308

Query  300  CTGACATCACTATTCATTTCAAGCAATTAGAAGACTCTGAGGATGACAATTCCCCTGGCT  359
            ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||
Sbjct  309  CTGACATCACTATTCATTTCAAGCAATTAGAAGACTCGGAGGATAACAATTCCCCTGCCT  368

Query  360  CGTCAAG-CCAAGAATCAGAGAGAGAGACAGTGATCACACTAGCTAATGGTAGTAACGGC  418
            ||||||| ||| |||||||||||||||||| |||| ||||||| ||||||||||||||||
Sbjct  369  CGTCAAGTCCA-GAATCAGAGAGAGAGACAATGATTACACTAGTTAATGGTAGTAACGGC  427

Query  419  CCAAAGAAGAGGTTACAGAAGAA-GGTGGAAAAGAGCATCCTGGGTGAGCCGAGCCCTAA  477
            |||||||||||||||||| |||| || |||||||||||| ||||||||||| ||||||||
Sbjct  428  CCAAAGAAGAGGTTACAGGAGAACGG-GGAAAAGAGCATGCTGGGTGAGCCCAGCCCTAA  486

Query  478  GCAACAAGTCACTCAGCCTGAAGCAGGGAAACCACCACCGCCTCAGAGACGTCTGGGCCC  537
            ||||||| |||||||||||||||||||||||||||||| |||||| ||||| ||||| ||
Sbjct  487  GCAACAAATCACTCAGCCTGAAGCAGGGAAACCACCACAGCCTCATAGACGCCTGGGGCC  546

Query  538  CCTACTAAATGATATAAATAAGAAATCAGATGCTTTTATCGAGAGTACACTCGAGAAGAT  597
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  547  CCTACTAAATGATATAAATAAGAAATCAGATGCTTTTATCGAAAGTACACTCGAGAAGAT  606

Query  598  GAGGAAAAGCTTAGCCTAGAACTAAACACATGAGCCTCCTTCTTCTCTGGCTTTCTCTGT  657
            ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  607  GAGGAAAGGCTTAGCCTAGAACTAAACACATGAGCCTCCTTCTTCTCTCGCTTTCTCTGT  666

Query  658  CGA  660
            |||
Sbjct  667  CGA  669


 Score =  204 bits (110),  Expect = 1e-51
 Identities = 128/137 (93%), Gaps = 0/137 (0%)
 Strand=Plus/Plus

Query  665  ACTCAATTCTTTAATTTTCTTTAAATTTACCAGCTGCATTCTTGATAAGAAAACATATAT  724
            |||||||||||| | ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct  713  ACTCAATTCTTTTACTTTGTTTAAATTTACCAGCTGCATTCTTGATAACAAAACGTATAT  772

Query  725  GTACTCGCACTTCTATTTTGAACAAAAATTCATCTCAGAACTTTATGATTTACAAGAAAT  784
            |||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct  773  GTACTCCCACTTGTATTTTGAACAATAATTCATCTCAGAACTTTAAGATTTACAAGAAAT  832

Query  785  ATTCCTTAAGGGGCTAG  801
            |||||||||||||||||
Sbjct  833  ATTCCTTAAGGGGCTAG  849



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38981698072


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5