BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484001

Length=551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G48090.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   756    0.0  


> AT2G48090.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, 
root, flower, carpel; EXPRESSED DURING: 4 anthesis, petal 
differentiation and expansion stage; Has 3 Blast hits to 3 proteins 
in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr2:19669110-19669764 REVERSE LENGTH=655
Length=655

 Score =  756 bits (409),  Expect = 0.0
 Identities = 497/536 (93%), Gaps = 20/536 (4%)
 Strand=Plus/Plus

Query  1    GTACTTCCCAAGCTGACATCGATGGCAAAGAA--C-TCATCAGAGAGTAGTAGCAAGAAG  57
            |||||||||||| ||||||| |||||||||||  | |||||| |||||||||||||||||
Sbjct  15   GTACTTCCCAAGGTGACATCCATGGCAAAGAACTCATCATCACAGAGTAGTAGCAAGAAG  74

Query  58   AAGCAAGAAAACAGAGTGTGCGAGAAGTTCTTCAGAGCAGTGACTAGTCCTGTCCGAACC  117
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  75   AAGCAAGAAAACAGAGTGTGCGAGAAGATCTTCAGAGCAGTGACTAGTCCTGTCCGAACC  134

Query  118  GTTCGCCGCATCTCCACCAAACCTTCACCAGCAGAGGCTGTTCCCGTCAAATTTGCAGAG  177
            ||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct  135  GTTCGTCGCATCTCCACCAAATCTTCACCAGCAGAGGCTGTTCGCGTCAAATTTGCAGAG  194

Query  178  ACACCGACT----C-A-GGCAGCCAAACCCATTACAAAGATGAAACCGGTGATCGCTCGA  231
            ||| || ||    | | |||||||||||||||||||||| || |||||||||||||||||
Sbjct  195  ACATCGGCTAGGCCTAGGGCAGCCAAACCCATTACAAAGGTGGAACCGGTGATCGCTCGA  254

Query  232  GTGGAGACTA-GTATCAAAACGGACGAGAGGTTCACTGACTATATAAAGAAAGCGAAGCT  290
            ||||| |||| | ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct  255  GTGGATACTACG-ATCAAAACGGACGAGAGGTTCACCGAGTATATAAAGAAAGCGAAGCT  313

Query  291  GAAGATAAGGGCGATGACGAATGTCGGTGATATGATGAAGGAGGATGCGTGGGAGACAAG  350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  314  GAAGATAAGGGCGATGACGAATGTCGGTGATATGATGAAGGAGGATGCGTGGGAGACAAG  373

Query  351  TGA-GA--CAGATCAGACACGTCATGATCATCATCACCA---TGTCCCGATCTCTCACGT  404
            ||| ||  |||||||||||||||||||||||| ||||||   ||| || |||||||||||
Sbjct  374  TGATGAAACAGATCAGACACGTCATGATCATCTTCACCACCATGTGCCTATCTCTCACGT  433

Query  405  AGGAAGTAGTGG--G-AGATCATCAGATCAGTTCTCTGAGTACATAAAGAAGGCAAAGAT  461
            ||| ||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  434  AGGTAGTAGTGGCCGGAGATCATCAGATCAGTTCTCTGAGTACATAAAGAAGGCAAAGAT  493

Query  462  GAAGCTCAGATCCTCTTCCACCATTGCTCGTGCTAACCCGACTTTCAAGTGATGGA  517
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  494  GAAGCTCAGTTCCTCTTCCACCATTGCTCGTGCTAACCCGACTTTCAAGTGATGGA  549


 Score = 67.6 bits (36),  Expect = 1e-10
 Identities = 36/36 (100%), Gaps = 0/36 (0%)
 Strand=Plus/Plus

Query  516  GAGAGATTGATATATATGTATATGTTTTGTGGTGTG  551
            ||||||||||||||||||||||||||||||||||||
Sbjct  587  GAGAGATTGATATATATGTATATGTTTTGTGGTGTG  622



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26423161322


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5