BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484002
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
AT2G48100.1 | Symbols: | Exonuclease family protein | chr2:196... 1583 0.0
AT1G18220.1 | Symbols: ATPUP9, PUP9 | purine permease 9 | chr1:... 69.4 7e-11
> AT2G48100.1 | Symbols: | Exonuclease family protein | chr2:19670501-19673292
FORWARD LENGTH=1739
Length=1739
Score = 1583 bits (857), Expect = 0.0
Identities = 1003/1075 (93%), Gaps = 4/1075 (0%)
Strand=Plus/Plus
Query 36 TCGCTTTGATTTTCCATGGATTCTCGGTCGATTTCTTTCAAGAAACGAAAGATAAGAGTC 95
|||||||||| |||||||||||||| || || | ||| ||||| ||| |||||||| |||
Sbjct 245 TCGCTTTGATATTCCATGGATTCTCAGTTGAATCCTTCCAAGAGACGCAAGATAAGTGTC 304
Query 96 AGGCACAGATGCGTAGCGTGCTACAAGATGTTCAATAGACGCGAACACCTCGTTGAGCAC 155
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 305 AGGCACAGATGCGTTGCGTGCTATAAGATGTTCAATAGACGAGAACACCTCGTTGAGCAC 364
Query 156 ATGAAGATTGCCTACCACTCACTTCACCAGCCTCGTTGTGGGGTTTGCCTTAAGCACTGT 215
||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 365 ATGAAGATTTCCTACCACTCACTTCACCAGCCTCGCTGTGGGGTTTGCCTCAAGCACTGT 424
Query 216 AAATCCTTCGAATCTGTGAGGGAACACCTTAACGTTCCAGACCATCTTTTCAAAGGAAAC 275
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 425 AAATCCTTCGAATCCGTGAGGGAACACCTTAACGTTCCAGACCATCTTTCCAAAGGAAAC 484
Query 276 TGCAAAGCCATTTTCTCTAAACGAGGCTGTACTCTTTGTCTTCAAGTCTTTGAGGAGGCC 335
||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 485 TGCAAAGCCATTTTCACTAAACGAGGCTGTACTCTCTGTCTTCAAATCTTTGAGGAGGCC 544
Query 336 ATTGCTCTCGCGGACCATAAAAACAAGTGTCAGCTCTCCCCACCTCGTCCTCTTGGAACA 395
|||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 545 TTTGCTCTCGCCGAGCATAAAAACAAGTGTCACCTCTCCCCACCTCGTCCTCTTGGAACA 604
Query 396 TCTACCCAAAGAAATCCTTCTAGGTCACATT-CTGGTTCACGTCTCAAGGC-AGTGGCAC 453
||||||||||| ||||||||||| |||| || ||||||||||||||||||| | ||||||
Sbjct 605 TCTACCCAAAGGAATCCTTCTAGTTCAC-TTGCTGGTTCACGTCTCAAGGCTA-TGGCAC 662
Query 454 TTGACTGTGAAATGGTTGGTGGTGGTGATGACGGCACTATTGATCAGTGCGCATCCGTTT 513
||||||||||||||||||||||||||| ||| || |||||||||||||||||||| ||||
Sbjct 663 TTGACTGTGAAATGGTTGGTGGTGGTGCTGATGGGACTATTGATCAGTGCGCATCGGTTT 722
Query 514 GCCTGGTTGACGAAGACGAGAATGTGATCCTCTCCACTCACGTTCGACCACTACTCCCTG 573
||||||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||
Sbjct 723 GCCTGGTTGACGATGACGAGAATGTGATCTTCTCCACTCACGTTCAACCACTGCTCCCTG 782
Query 574 TCACAGATTACAGGCACGAGGTAACTGGATTGAGTGAGGAAGACTTGAAGGATGGTATGC 633
|||| ||||||||||||||| |||||||||||| | ||||||| ||||||||||||||||
Sbjct 783 TCACCGATTACAGGCACGAGATAACTGGATTGACTAAGGAAGATTTGAAGGATGGTATGC 842
Query 634 CACTTGAGGATGTACGAGCGAGAGTTGTTTCGATCCTATGCGGTGGACATAATGATGGGG 693
|||||||| ||||||||| ||||||| ||||| || | ||||||||||| ||||||||||
Sbjct 843 CACTTGAGCATGTACGAGAGAGAGTTTTTTCGTTCTTGTGCGGTGGACAGAATGATGGGG 902
Query 694 CTGGGAGGCTTCTTCTTGTTGGTCATGACCTTAGGCATGATATGAGTTGCTTGAATCTTG 753
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 903 CTGGAAGGCTTCTTCTTGTTGGTCATGACCTTAGGCATGATATGAGTTGCTTGAAGCTTG 962
Query 754 AATACCCTAGCAATTTGTTGAGAGACACTGCAAAATATGTGCCGTTGATGAAGACAAATC 813
||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 963 AATACCCTAGCCATTTGTTGAGAGACACAGCAAAATACGTGCCGTTGATGAAGACAAATC 1022
Query 814 TTGTAAGCCAATCGCTGAGGTACCTCACAAAGTCGTATCTCGGATACAAGATCCAAAGCG 873
|||||||||||||||| | ||||||||||||||| |||||||||||||||||||| |||
Sbjct 1023 TTGTAAGCCAATCGCTCAAGTACCTCACAAAGTCATATCTCGGATACAAGATCCAGTGCG 1082
Query 874 GGAAGCACGAGCCGTACGAGGACTGTGTATCTGCGATGAGACTGTACAAGAGAATGCGGG 933
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GGAAGCACGAGGTTTACGAGGACTGTGTATCTGCGATGAGACTGTACAAGAGAATGCGGG 1142
Query 934 ATCAAGAGCATGGGTGTAGTGGAAAGGGAGAAGGGAATGGTCTGAACTCGTGGAAACAGA 993
|||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1143 ATCAAGAGCATGTTTGTAGTGGAAAGGCAGAAGGGAATGGTCTGAACTCGCGGAAACAGA 1202
Query 994 GCGATCTAGAGAAGATGAAGGCGGAAGAGCTGTACCAAAACTCAACGTCAGAGTACCGGT 1053
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1203 GCGATCTAGAGAAGATGAATGCGGAAGAGCTGTACCAAAAATCAACGTCAGAGTACCGGT 1262
Query 1054 GCTGGTGCCTTGACCGACTCAGCAATCCATGAAATGGAATCCCAAAGTCTCTTTT 1108
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1263 GCTGGTGCCTTGACCGACTCAGCAATCCATGAAATGAAATCCCAATTTCTCTTTT 1317
> AT1G18220.1 | Symbols: ATPUP9, PUP9 | purine permease 9 | chr1:6269670-6269807
REVERSE LENGTH=138
Length=138
Score = 69.4 bits (37), Expect = 7e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Minus
Query 699 AGGCTTCTTCTTGTTGGTCATGACCTTAGGCATGATATGA 738
|||||||||||||||||||||||||||||||||||| |||
Sbjct 117 AGGCTTCTTCTTGTTGGTCATGACCTTAGGCATGATTTGA 78
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57881228385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5