BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484005
Length=1175
Score E
Sequences producing significant alignments: (Bits) Value
AT2G48120.1 | Symbols: PAC | pale cress protein (PAC) | chr2:19... 1666 0.0
> AT2G48120.1 | Symbols: PAC | pale cress protein (PAC) | chr2:19679730-19681546
FORWARD LENGTH=1277
Length=1277
Score = 1666 bits (902), Expect = 0.0
Identities = 1001/1047 (96%), Gaps = 14/1047 (1%)
Strand=Plus/Plus
Query 137 ATTTCT-CAGCTAAATTCCTAAGAAGATGCTCGGG-AA-AA-GATGAAGTGCTTCTACAA 192
|||||| |||||||||||| ||||||||||||||| || || ||||||||||||||| ||
Sbjct 237 ATTTCTACAGCTAAATTCCGAAGAAGATGCTCGGGAAACAATGATGAAGTGCTTCTAGAA 296
Query 193 GGAATGCCACCGGAGTATTACGATGATGAATGGCAAGCTCAACagagagagaagaccaaa 252
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 297 GGAATGCCACCGGAGTATTACGATGATGAATGGCAAGCTCGACAGAGAGAGAAGACCAAA 356
Query 253 gatctgcggcggatgcagcgggaggaagaagaagaagaggagagaaagattgaagaaTAC 312
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GAACTGCGGCGGATGCAGCGGGAGGAAGAAGAAGAAGAGGAGAGAAAGATTGAAGAATAC 416
Query 313 CGTGAAATTGGCATGAGGTTGAAGGAATTTCCTGAGCAAGACTTAAGGAAAGCCAGAAAG 372
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 417 CGTGAAATTGGCACGAGGTTGAAGGAATTTCCCGAGCAAGACTTAAGGAAAGCCAGAAAG 476
Query 373 CTCGTCTCCAGCTTCATCAGAGCTGCCGAGGAAGTCGAAGAGAGAATTGAAGAAGCAGCC 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CTCGTCTCCAGCTTCATCAGAGCTGCCGAGGAAGTCGAAGAGAGAATTGAAGAAGCAGCC 536
Query 433 GAGAAAGGAGAACTTGACGAGCTTGTCCTCATGATCATATGGAACCGGCTTGACCTTGCT 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GAGAAAGGAGAACTTGACGAGCTTGTCCTCATGATCATATGGAACCGGCTTGACCTTGCT 596
Query 493 CGCCGCGATGATGAGAAGGACGCCATAAGAAGTCTTGATCTTTTGTATAGAAGAGTCGAG 552
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 597 AGGCGCGATGATGAGAAGGACGCCATCAGAAGTCTTGATCTTTTGTATAGAAGAGTCGAG 656
Query 553 ACAGAGATCTTAAAACGGCAAGCAAGTCCTGCAATGAATCTGCTGAATGATCTTCTAAAC 612
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 657 ACAGAGATCTTAAAACGGCAAGCAAGTCCTGCAATGAAACTGCTGAATGATCTTCTAAAT 716
Query 613 ATGCATGATGGCTTTGAAGACGATGCTTGGCTCAAGGACTGCAGAAAACGCATGGCGGAG 672
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 717 ATGCATGATGGCTTTGAAGACGATGCTTGGCTCAAGGACTGCAGAAAACGAATGGCTGAG 776
Query 673 ACCTTCCCCCGAGAAGACCCCTTCAGCATTCTAATGCCTCCGGGATTCGACATTGATATG 732
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 777 ACCTTCCCCCGAGAAGACCCCTTCAGCATTCTAATGCCACCGGGATTCGACATTGATATG 836
Query 733 CATCAAGGACAGTTGCGACCGCCCATTGAGACTGAGACAGACAACACCCTTCTGAGAGTA 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CATCAAGGACAGTTGCGACCGCCCATTGAGACTGAGACAGACAACACCCTTCTGAGAGTA 896
Query 793 GACTTTGTAAGAGAAGTGGATGCATTGCTACAGGAAGTGAGGATAGAGGAAGACGCTGA- 851
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 897 GACTTTGTAAGAGAAGTGGATGCACTGCTACAGGAAGTGAGGATAGAGGAAGACGCT-AC 955
Query 852 AACTGGTAGCAAAGGAGAAGGGCTTGATCCTGAAGCTATAGCACTTAAGTTTAAGCAGCA 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 956 AACTGGTAGCAAAGGAGAAGGGCTTGATCCTGAAGCTATAGCACTTAAGTTTAAGCAACA 1015
Query 912 GGAGAAGCAACGAACCATCCGCCAAGTTGAAGCCATTCTTGATTTGGCCCTCAACTTGAA 971
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1016 GGAGAAGCAACGAACCATCCGCCAAATTGAAGCCATTCTTGATTTAGCCCTCAACTTGAA 1075
Query 972 GTGGTAGGGAGGTAACAAGAACATCAATCTATATGCTATAATA-tttttttATAGATAGA 1030
|||||||| || |||| |||| ||||||||||| || |||||| |||||||| |||||||
Sbjct 1076 GTGGTAGGCAGTTAACTAGAATATCAATCTATACGCCATAATAATTTTTTTA-AGATAGA 1134
Query 1031 CCTTAGATTTTAGATTGATTCAGGCGTTTTTGTTTAGAAATGAATGAA-TC-AAATAATA 1088
|| |||| || ||||||||||||||||||||||||||||||||||| | || ||||||||
Sbjct 1135 CCCTAGAGTT-AGATTGATTCAGGCGTTTTTGTTTAGAAATGAATGGAGTCTAAATAATA 1193
Query 1089 GGTTTTGGCCAAAAATTCCAAATCAAAATGTTGGTGACTAATCTCTTTGCTTCATAGTCT 1148
||||||||| |||||||||||||| |||||||| |||||| ||||| |||| ||||||||
Sbjct 1194 GGTTTTGGCTAAAAATTCCAAATCCAAATGTTGCTGACTA-TCTCTCTGCT-CATAGTCT 1251
Query 1149 CTCTCCACAATCATCTCTTCCTCTTTC 1175
| | |||||||||||||||||||||||
Sbjct 1252 C-CACCACAATCATCTCTTCCTCTTTC 1277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57680426205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5