BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484007
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT2G48150.1 | Symbols: ATGPX4, GPX4 | glutathione peroxidase 4 ... 1103 0.0
AT3G63080.1 | Symbols: ATGPX5, MEE42, GPX5 | glutathione peroxi... 385 4e-106
> AT2G48150.1 | Symbols: ATGPX4, GPX4 | glutathione peroxidase
4 | chr2:19687962-19689173 REVERSE LENGTH=734
Length=734
Score = 1103 bits (597), Expect = 0.0
Identities = 644/666 (97%), Gaps = 6/666 (1%)
Strand=Plus/Plus
Query 20 AGAGATGGGTGCTTCTGCTTCGGTTCCCGAGAGATCCGTCCATCAATTCACTGTAAAGGA 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 AGAGATGGGTGCTTCTGCTTCGGTTCCCGAGAGATCCGTCCATCAATTCACTGTAAAGGA 130
Query 80 TAGCTCCGGCAAGGACCTGAATTTGAGCATTTACCAAGGAAAAGTCCTCCTCATCGTCAA 139
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 131 TAGCTCCGGCAAGGACCTGAATATGAGCATTTACCAAGGGAAAGTCCTCCTCATCGTCAA 190
Query 140 TGTTGCTTCCAAATGCGGTTTCACCGAAACAAACTATACCCAGCTCACCGAACTTTACCG 199
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 191 TGTTGCTTCCAAATGCGGTTTCACCGAAACAAACTATACACAGCTCACCGAACTTTACCG 250
Query 200 GAAATTCAAGGACCAAGATTTTGAGATCTTGGCATTCCCTTGCAACCAGTTTCTATACCA 259
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 GAAATACAAGGACCAAGATTTTGAGATCTTGGCATTCCCTTGCAACCAGTTTCTATACCA 310
Query 260 GGAGCCCGGCACAAGTCAAGATGCTCATGAATTTGCCTGC-ACACGCTTTAAGGCCGAAT 318
||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 311 GGAGCCCGGCACAAGTCAAGAGGCTCATGAATTTGCCTGCGA-ACGCTTTAAGGCCGAAT 369
Query 319 ACCCTGTTTTCCAAAAGGTACGCGTAAACGGTCAAAACGCAGCACCACTCTATAAATTCC 378
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 370 ACCCTGTTTTCCAAAAGGTACGCGTAAACGGTCAAAACGCAGCACCAATCTATAAATTCC 429
Query 379 TGAAGGCAAGTAAACCCACCTTTCTGGGTTCCAGGATAAAGTGGAACTTCACCAAGTTCT 438
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 430 TTAAGGCAAGTAAACCCACCTTTCTGGGTTCCAGAATTAAGTGGAACTTCACCAAGTTCT 489
Query 439 TGGTCGGCAAAGATGGCTTAGTGATTGATCGTTATGGCACGATGGTTACACCGCTATCAA 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 TGGTCGGCAAAGATGGCTTAGTGATTGATCGTTATGGCACGATGGTTACACCGCTATCAA 549
Query 499 TCGAGAAAGACATCAAGAAAGCTCTTGAAGACGCTTGAAAACAACAGACGAGATTGCCGA 558
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 550 TCGAGAAAGACATCAAGAAAGCTCTTGAAGACGCTTGAAAACAACAGACGAGATTGCC-A 608
Query 559 AT-AACA-TCACAGTTAATTTTGTAATGTAAATTGCAGCTTTTATGTCGAAATTTCTTTT 616
|| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 ATTAACAATCACGGTTAATTTTGTAATGTAAATTGCAGCTTTTATGTCGAAATTTCTTTT 668
Query 617 TG-ACAAGTTTCTCTGTTTAGTGTATTCGAAAAGAAGTCCTTTTGGGAGAGTAGGTTGCT 675
|| ||| ||||||||||||||||||| ||||||| ||||||||| |||||||||||||
Sbjct 669 TGGACATGTTTCTCTGTTTAGTGTATAAAAAAAGAATTCCTTTTGGAAGAGTAGGTTGCT 728
Query 676 GTTTTC 681
||||||
Sbjct 729 GTTTTC 734
> AT3G63080.1 | Symbols: ATGPX5, MEE42, GPX5 | glutathione peroxidase
5 | chr3:23309737-23311386 FORWARD LENGTH=1132
Length=1132
Score = 385 bits (208), Expect = 4e-106
Identities = 398/488 (82%), Gaps = 20/488 (4%)
Strand=Plus/Plus
Query 48 GAGAGATCCGTCCATCAATTCACTGTAAAGGATAGCTCCGGCAAGGA-CCTGAATTTGAG 106
|||| ||| ||||||||||||| || |||||||||||||||||||| || | | ||
Sbjct 455 GAGAAATCAATCCATCAATTCACCGTCAAGGATAGCTCCGGCAAGGAGGTTG-ACCTAAG 513
Query 107 CATTTACCAAGGAAAAGTCCTCCTCATCGTCAATGTTGCTTCCAAATGCGGTTTCACCGA 166
| | || ||||| ||||| || ||| ||||||| || ||||| |||||||| ||||| ||
Sbjct 514 CGTGTATCAAGGGAAAGTGCTGCTCGTCGTCAACGTCGCTTCTAAATGCGGATTCACGGA 573
Query 167 AACAAACTATACCCAGCTCACCGAACTTTACCGGAAAT-TCAAGGACCAAGATTTTGAGA 225
| || || |||||||| || |||||||||||||||| | || || |||| ||||| |
Sbjct 574 GTCCAATTACACCCAGCTGACGGAACTTTACCGGAAATAT-AAAGATCAAGGTTTTGTGG 632
Query 226 TCTTGGCATTCCCTTGCAACCAGTTTCTATACCAGGAGCCCGGCACAAGTC-AAGATGCT 284
| ||||| || ||||||||||||||||| | ||| ||||| ||||| || | |||| |||
Sbjct 633 TATTGGCGTTTCCTTGCAACCAGTTTCTGTCCCAAGAGCCTGGCACCAG-CGAAGAGGCT 691
Query 285 CATGAATTTGCCTGCACACGCTTTAAGGCCGAATACCCTGTTTTCCAAAAGGTACGCGTA 344
||| ||||||| || || ||||||||||| ||||||||||||||||||||||| || |||
Sbjct 692 CATCAATTTGCTTGTACTCGCTTTAAGGCTGAATACCCTGTTTTCCAAAAGGTGCGTGTA 751
Query 345 AACGGTCAAAACGCAGCACCACTCTATAAATTCCTGAAGGC-AAGTAAACCCACCTTTC- 402
|| || |||||||| |||||| |||| |||||||| || | ||| |||||| | ||||
Sbjct 752 AATGGACAAAACGCTGCACCAGTCTACAAATTCCTCAAATCTAAG-AAACCCTCTTTTCT 810
Query 403 TGG--GTTCCAGGAT-AAAGTGGAACTTCACCAAGTTCTTGGTCGGCAAAGATGGCTTA- 458
||| | | | | || ||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 811 TGGAAG-T-C-GTATCAAA-TGGAACTTCACCAAGTTCTTGGTCGGCAAAGATGG-TCAA 865
Query 459 GTGATTGATCGTTATGGCACGA-TGGTTACACCGCTATCAATCGAGAAAGACATCAAGAA 517
|| ||||||||||||||||| | || || |||| ||||| ||| ||||||||||| ||||
Sbjct 866 GTCATTGATCGTTATGGCACAACTGTTT-CACCTCTATCCATCCAGAAAGACATCGAGAA 924
Query 518 AGCTCTTG 525
||| ||||
Sbjct 925 AGCCCTTG 932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5