BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484008
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
AT2G48140.1 | Symbols: EDA4 | Bifunctional inhibitor/lipid-tran... 998 0.0
> AT2G48140.1 | Symbols: EDA4 | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein |
chr2:19686409-19687664 FORWARD LENGTH=856
Length=856
Score = 998 bits (540), Expect = 0.0
Identities = 612/646 (95%), Gaps = 8/646 (1%)
Strand=Plus/Plus
Query 1 ATCTTCACCGGAGGATTAAGCAGGCCAATTAAAATGGAAGGCTTAACATTGATAGTAGTG 60
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCGTCACCGGAAGATTAAGCAGGCCAATTAAAATGGAAGGCTTAACATTGATAGTAGTG 60
Query 61 ATGATGTCAAGCTTTATGTTGGGAGGGAAAGGTCAGCAGATAAGCACGCCATGTACCTCC 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 61 ATGATGTCAAGCTTTATGTTGGGAGGGCAAGGTCAGCAGATAAGCACGCCATGCACCTCC 120
Query 121 TCCATGATCTCTACCTTCACTCCATGTCTCAACTTCATCACCGGAAGCAGCGGCGGTTCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCATGATCTCTACCTTCACTCCATGTCTCAACTTCATCACCGGAAGCAGCGGCGGTTCC 180
Query 181 GTCACTCCCACCGCCGGCTGCTGCGACTCCTTGAAGACGTTGACCAACACCGGAATGGGC 240
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 181 GTCACTCCCACCGCCGGCTGCTGCGACTCCTTGAAGACGTTGACCAACACTGGCATGGGC 240
Query 241 TGTGCTTGCCTCATCCTCACCGCTAATGTCCCGCTGCCTACTGGCTTCATCAATCGGACT 300
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 241 TGTGCTTGCCTCATCCTCACTGCTAACGTCCCGCTGCCTACTGGCTTCATCAATCGGACT 300
Query 301 CTCGCGCTTGCTCTACCTCGAGCCTGCAAAATGGGCGGTGTACCTATTCAGTGTCAAGCT 360
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CTGGCGCTTGCTCTACCTCGAGCCTGCAAAATGGGCGGTGTACCTATTCAATGTCAAGCT 360
Query 361 GCGGGGGCTCCTCTACCAGCGCCAGGTCAGGTTCCATTTTTGATTGCTCCCCCACCTCCT 420
|||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 361 GCGGGGACTCCTCTACCAGCTCCAGGTCAGGTTCCATTTTTGATTGCTCCACCACCTCAG 420
Query 421 GTCTCTGCTTTTAGCCCCGGAGCGTCCAAGGCGGCGGTGACAACACCAACACAGGCACCT 480
|| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 GTGTCTGCTTTTAGCCCGGGAGCGTCCAAGGCGGCGGGGACAACACCAACACAGGCACCT 480
Query 481 GCACCTGCACCGGATACTCCCGCAGATGGACCAACGGGTCCCACAACTAAACCCGGAATT 540
||||| | | |||||||||| |||||||||||||| |||||||||||| | ||||||
Sbjct 481 GCACC-G----G-ATACTCCCGCGGATGGACCAACGGGACCCACAACTAAATCAGGAATT 534
Query 541 CGACCCGTAGATCAGCCCATGCAACCCACCAGCCTCGCTCAGTTTTCTACTTCTCCATTT 600
|||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||
Sbjct 535 CGACCCGTAGATCAGCCCATGCAACCCACCGGCCTCGCTCAATCTTCTACTTCTCCATTT 594
Query 601 CTCCCGTTGCTCTTCATATCTCTTATCCTGTTGA-CTTTATAAGCC 645
||||||||||| |||||||||||||||||||||| ||| |||||||
Sbjct 595 CTCCCGTTGCTTTTCATATCTCTTATCCTGTTGAACTT-ATAAGCC 639
Score = 122 bits (66), Expect = 3e-27
Identities = 84/92 (91%), Gaps = 4/92 (4%)
Strand=Plus/Plus
Query 646 TGTTGTCAGATATTTTCATTACGAGTTCATTGTTACACATGATTTCAACAAAAA---TAC 702
||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||
Sbjct 676 TGTTGTCAGATATTTTCATTACGAGTTCATTTTTACACATGATTTCAGCAAAAAAAATAC 735
Query 703 T-TGTCAAGACTCTGATAAATTATTTCAAAAA 733
| | |||| |||||||||||||||||||||||
Sbjct 736 TATTTCAATACTCTGATAAATTATTTCAAAAA 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37022566339
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5