BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484011
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01060.1 | Symbols: | myb-like HTH transcriptional regulato... 1901 0.0
> AT2G01060.1 | Symbols: | myb-like HTH transcriptional regulator
family protein | chr2:73258-75389 REVERSE LENGTH=1264
Length=1264
Score = 1901 bits (1029), Expect = 0.0
Identities = 1196/1273 (94%), Gaps = 26/1273 (2%)
Strand=Plus/Plus
Query 1 GGAATTCGTCGATCGAGCGAT---AACAAGTCTGGGAAATTTTTTGAGGAGGACTCTGCT 57
||||||||||||||||||||| || ||| || |||| |||||||||||||||||||||
Sbjct 1 GGAATTCGTCGATCGAGCGATAAGAAGAAGACT-GGAATTTTTTTGAGGAGGACTCTGCT 59
Query 58 GCAT---CG-CCGCCCAGTGATCAACCGGACACAGTAAACTAGTCTATAACACAA-AACC 112
||| || |||||| || | | ||||||| |||||||||||||| |||||||| | |
Sbjct 60 CCATCGCCGCCCGCCCTGTAACCCACCGGACTCAGTAAACTAGTCTGTAACACAATATCT 119
Query 113 TC-A-TTCAGATTAGATTTAGATTGAAGAAGAGCAAGTTCCGAAAATGGAGGGGCGTCGT 170
|| | ||||||| |||||||| ||| |||||||||||||||||||||||| ||| | |||
Sbjct 120 TCTATTTCAGATAAGATTTAGCTTGGAGAAGAGCAAGTTCCGAAAATGGA-GGG-G-CGT 176
Query 171 CTGATTCTTGTATAGATCCACCACTCACAGCCCTGATGGAAGGAGACAACGGCGGCACCA 230
| | |||||||||||||||| ||||||||||||||||| ||||||||| ||| |||
Sbjct 177 C-G-----TGTATAGATCCACCACCCACAGCCCTGATGGAAGCAGACAACGGAGGCCCCA 230
Query 231 ATTCTAGTCATGCATCCAAACAACGTTTGCGTTGGACGCATGAGCTTCATGAACGCTTCG 290
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 231 ATTCTAGTCATGCATCCAAACAACGTCTGCGTTGGACGCATGAGCTACATGAACGCTTCG 290
Query 291 TTGATGCCGTTGCTCAACTTGGTGGCCCTGATAGAGCTACACCCAAAGGCGTTCTTAGAG 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TTGATGCCGTTGCTCAACTTGGTGGCCCTGATAGAGCTACACCCAAAGGCGTTCTTAGAG 350
Query 351 TGATGGGTGTACAAGGATTAACTATATATCATGTCAAGAGTCACTTACAGAAATATAGAC 410
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 351 TGATGGGTGTACAAGGCTTAACTATATATCATGTCAAGAGTCACTTACAGAAATATCGAC 410
Query 411 TTGCAAAGTATCTTCCAGATTCGTCTTCTGAAGGGaaaaaaaCTGATAAGAAAGAATCTG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TTGCAAAGTATCTTCCAGATTCGTCTTCTGAAGGGAAAAAAACTGATAAGAAAGAATCTG 470
Query 471 GTGATATGCTCTCTGGGTTGGACGGCTCGTCGGGAATGCAGATAACTGAAGCCCTCAAGT 530
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GAGATATGCTCTCTGGGTTGGACGGCTCGTCGGGAATGCAGATAACTGAAGCCCTCAAGT 530
Query 531 TGCAGATGGAAGTTCAGAAACGACTGCACGAGCAACTAGAAGTGCAAAGACAGCTGCAAC 590
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 531 TGCAGATGGAAGTTCAGAAACGATTACACGAGCAACTAGAAGTGCAAAGACAGCTGCAAC 590
Query 591 TACGAATAGAAGCACAAGGGAAGTACTTGAAGAAGATAATTGAAGAGCAACAACGACTCA 650
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TACGGATAGAAGCACAAGGAAAGTACTTGAAGAAGATAATTGAAGAGCAACAACGACTCA 650
Query 651 GTGGAGTACTTGGCGAACCCTCAGCCCCAGTAACGGGCGATTCAGATCCTGCAACCCCTG 710
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GTGGAGTACTCGGCGAACCCTCAGCCCCAGTAACGGGCGATTCAGATCCTGCAACCCCTG 710
Query 711 CCCCAACATCTGAGTCTCCTCTTCAAGACAAGTCTGGCAAGGAATGTGGACCAGACAAGA 770
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 711 CCCCAACATCTGAGTCTCCTCTTCAAGACAAGTCTGGCAAGGACTGTGGACCAGACAAAA 770
Query 771 GCCTCTCAGTTGACGAGTCTCTCTCATCTTACCGGGAGCCTTTAACACCAGACTCGGGGT 830
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 771 GTCTCTCAGTTGACGAGTCTCTCTCATCTTACCGGGAGCCTTTAACACCAGACTCAGGGT 830
Query 831 GTAACATTGGGTCTCCAGATGAGAGCGGAGGAGAGGAGAGATTATCAAAGAAGCCTAGAT 890
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 831 GTAACATTGGGTCTCCAGATGAGAGCACAGGAGAGGAGAGATTATCAAAGAAGCCTCGAT 890
Query 891 TGGTGAGAGGTGCAGCTGGTTATACACCTGATATTGTAGTGGCACACCCAATACTAGAAT 950
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 891 TGGTGAGAGGTGCAGCTGGTTATACACCTGATATTGTAGTGGGTCACCCAATACTAGAAT 950
Query 951 CAGGCTTGAACTCTTCTTACCATCCGTCAGACCATGCTC-TCGCCTTTGACCAGCCATCT 1009
||||||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 951 CAGGCTTGAACACTTCTTACCATCAGTCAGACCATG-TCCTCGCCTTTGACCAGCCATCT 1009
Query 1010 ACATCACTGCTTGGGGCCGAAGATCAGTTGGATAAGGGTTCAGGAGATAATCTTTGAGTT 1069
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1010 ACATCACTGCTTGGGGCCGAAGAACAGTTGGATAAGGTTTCAGGAGATAATCTTTGAGTT 1069
Query 1070 GTTGAGTGTACCACATGTAGTGTTGTCTATCCTAATCTTTATTAGTTAGGAGTTTCCTCT 1129
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1070 GTTGAGTGTACCACATGTAGTGTTGTTTATCCTAATCCTTATTAGTTAGGAGTTTCCTCT 1129
Query 1130 AGTGATGTGATCACAACTCTGT-AATTTTCTAGGCACTGTCAAGAGCATGAAGAATGAAT 1188
| | |||||||||||| || || |||| |||||||||| ||| |||||||||||||||||
Sbjct 1130 AATAATGTGATCACAAGTC-GTTAATTCTCTAGGCACTATCACGAGCATGAAGAATGAAT 1188
Query 1189 ATGTCTGTGTTGTGCTGTAATTTGGTAAACACAA--CAAAATTACTCTTATTCCCAACAC 1246
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1189 ATGTCTGTGTTGTGCTGTAATTTGGTAAACACAAAACAAAATTACTCTTATTCCCAACAC 1248
Query 1247 ACTGCATTCTTCT 1259
||| |||||||||
Sbjct 1249 ACTACATTCTTCT 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5