BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484013
Length=1771
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01070.1 | Symbols: | Lung seven transmembrane receptor fam... 2758 0.0
> AT2G01070.1 | Symbols: | Lung seven transmembrane receptor family
protein | chr2:75520-77865 FORWARD LENGTH=1807
Length=1807
Score = 2758 bits (1493), Expect = 0.0
Identities = 1676/1761 (95%), Gaps = 26/1761 (1%)
Strand=Plus/Plus
Query 20 TCCTCGTTCCCCGATGATAATGGATTTGAGAAAACTGATCCACCTATCT-CTGCTGTTGT 78
|||||||||||| ||||||||||||| ||||||||||||| || ||| | |||| |||
Sbjct 61 TCCTCGTTCCCC---GATAATGGATTTGGGAAAACTGATCCAGCTGTCTGC-GCTGCTGT 116
Query 79 GCCCACTTCTTCTATCATTCCACTTTAAAATCGCAGGGGCCTCCGCCCACATCTACCCTT 138
||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||| |||
Sbjct 117 GCCCATTTCTTCTATCATTACACTTTAGAATCGCTGGGGCCTCCGCCCACATCTACTCTT 176
Query 139 CCCAGCCCTTCCACGATGTCGGTAATTCTCTCCTCCTCTACGGTGGCAGCGAGGGCATCT 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CCCAGCCCTTCCACGATGTCGGTAATTCTCTCCTCCTCTACGGTGGCAGCGAGGGCATCT 236
Query 199 TCGCCTCTCCCCGATCTTTCATCAGGTTTGAGAACATCACTCTCTGGAGGACAATTACCG 258
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TCGCCTCTTCCCGATCTTTAATCAGGTTTGAGAACATCACTCTCTGGAGGACAATTACCG 296
Query 259 ATAAAGGCCACCGCAGCAATGGGTTAATTCAATCAGTGATCTTTGAAGCCTCCGATCGTA 318
||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 297 GTAAGGGCCACCGCAGCAATGGGTTAGTTCAAGCAGTGATCTTTGAAGCCTCCGATCGTA 356
Query 319 ACAATATCGGTGGTTCAGCTTACGGCGGCCAAAGATCTATTTGCTGCACTCCAGATCTGG 378
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 357 ACAATATCGGTGGTTCAGCTTACGGAGGCCAAAGATCTATTTGCTGCACTCCAGATCTGG 416
Query 379 CCAAGCTTCAAGGTTGTAAGCAGCGTGAGATCATTAGGATTCCTTCTGCACATGACCCT- 437
||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 417 CCAAGCTTCAAGGCTGTAAGCAGGGTGAGATCATTAGGATTCCTTCTCCACATGACCCTC 476
Query 438 AGATGGCCTATCCTCTTACCCCTCCGCTTCAAAGGAAAACGTTTGTCTGCTAAGATGGAA 497
| |||||||||||||||||| ||||||| ||||||||||| | |||||||||||||| |
Sbjct 477 A-ATGGCCTATCCTCTTACCTGTCCGCTTTAAAGGAAAACGCTCGTCTGCTAAGATGGCA 535
Query 498 GACACTGAGATTCTTATCACCAAGACTGGAATCTATAATCTCTTATTCATATCTTGTGAT 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GACACTGAGATTCTTATCACCAAGACTGGAATCTATAATCTCTTATTCATATCTTGTGAT 595
Query 558 CCACAACTCAAGGGCCTCACAATGACCGGAAAGACTGTTTGGAAAAATCCCGACGGCTAT 617
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CCACAACTTAAGGGCCTCAAAATGACCGGAAAGACTGTTTGGAAAAATCCCGACGGCTAT 655
Query 618 CTTCCTGGTAGGATGGCTCCACTCATGAATTTCTATGTCTTTATGTCTCTCGCTTATTTG 677
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 656 CTTCCTGGTAGGATGGCTCCACTCGTGAATTTCTATGTCTATATGTCTCTCGCTTATTTG 715
Query 678 TTGCTCAGTGCCGTCTGGTTCTTCCAGTATTTGAGGTTCCGGATGGATATATTGCCACTT 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TTGCTCAGTGCCGTCTGGTTCTTCCAGTATTTGAGGTTCCGGATGGATATATTGCCACTT 775
Query 738 CAACATTGCATTACTGCGGTCATTCTTCTCGGATTGCTTGAGATGCTCTTTTGGTACTTG 797
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 776 CAACATTGCATTACTGCCGTCATTCTTCTAGGATTGCTTGAGATGCTCTTTTGGTACTTG 835
Query 798 GATTATGCAAATTTTAA-CAACACGGGGATGAGGCCTTTAGCCCTTACTACATGGGTTGT 856
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 836 GATTATGCTAATTTTAATCA-CACGGGGATGAGGCCTTTAGCCCTTACTACATGGGTTGT 894
Query 857 TACCATTGGTGCCTTCAGAAAGACTGTTTCCCGCATTCTCATTCTCTGTGTTTCCATGGG 916
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TACCATTGGTGCCTTGAGAAAGACTGTTTCCCGCATTCTCATTCTCTGTGTTTCCATGGG 954
Query 917 ATTTGGGGTTGTCAAATCCACTCTTGGTGGTCTGACTTCTAAAGTCCTCCTTGTTGGAGT 976
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 955 ATTTGGGGTTGTCAAATCTACTCTTGGTGGTCTCACTTCTAAAGTCCTCCTTGTTGGAGT 1014
Query 977 TACTTACTTCATAGCTTCTGAGATGCTTGATATAGCTGAGCACGTTGGCATAATTGACGA 1036
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 1015 TACTTACTTCATAGCTTCTGAGATCCTTGATATTGCTGAGCACGTTGGCATCATTGACGA 1074
Query 1037 TATGTCCGGAAGATCAAAACTTTTTCTTGTCCTTCCTGACGCCTTCCTGGATGCATTTCT 1096
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1075 TATGTCCGGAAGATCAAAACTTTTTCTTGTCCTTCCTGACGCCTTCCTCGATGCATTTCT 1134
Query 1097 CATATTGTGGATATTTACCTCTCTTTCCAAAACACTGGAACAGTTACAGATGAAAAGGAC 1156
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1135 CATATTGTGGATATTTACCTCTCTTTCGAAAACACTGGAACAGTTACAGATGAAAAGGAC 1194
Query 1157 CTCGGTGAAGCTGGAAATTTACCGCAAGTTCTCAAATGCTCTTGCTGTGATGGTTGTTGC 1216
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1195 CTCGGTGAAGCTGGAAATTTACCGCAAGTTCTCAAATGCACTCGCTGTGATGGTTGTTGC 1254
Query 1217 CTCTGTTGCATGGATAGTGTATGAGGTGTATTTCAAAGCAACAGATCCATTCAATGAACG 1276
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 CTCTGTTGCGTGGATAGTGTATGAGGTGTATTTCAAAGCAACAGATCCATTCAATGAACG 1314
Query 1277 ATGGCAGACTGCTTGGACTATAACTGCCTTCTGGGATGTTATTGCATTCTTGTTACTATG 1336
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1315 ATGGCAGACTGCTTGGACTATAACTGCCTTCTGGGATGTTATCGCATTCTTGTTGCTATG 1374
Query 1337 TATTATTTGCTATCTCTGGACCCCCTCACAGAACTCCCAAAGATATGCATATTCGGGAGA 1396
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1375 TATTATTTGCTATCTCTGGACCCCCTCGCAGAACTCCCAAAGATATGCATATTCGGGAGA 1434
Query 1397 CGTGGATGAAGAAAACGAGGAAGCTCAATCTCTGACAGGGGGGAAGCAAGATGGTGATAT 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CGTGGATGAAGAAAACGAGGAAGCTCAATCTCTGACAGGGGGGAAGCAAGATGGTGATAT 1494
Query 1457 TAACTTAGTTAAGCAAGAGAAGAATGCTGAGTCGGACAGGGAAGAAGATGTTGAAGAAGA 1516
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1495 TAGCTTAGTTAAGCAAGAGAAGAATGCGGAGTCGGACAGGGAAGAAGATGTTGAAGAAGA 1554
Query 1517 TAAGAGAGAGTGAGGATAGTCGGTGTAAAGAAACGACTTGGCATCTGTGTTTGATCATGA 1576
||| |||||||||||| |||| || || |||||||| ||||||||||||||||||| ||
Sbjct 1555 TAAAAGAGAGTGAGGAGAGTCAGTATA--GAAACGACGTGGCATCTGTGTTTGATCAAGA 1612
Query 1577 GTTGACGGAAGTATAAATATCAGCAAGAGGTCAGCTATATAGCACAAAGCAACAAAGCTA 1636
||||||| || |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1613 GTTGACGAAAATATAAATATCAGCAAGAGGTCAGCTATATAGCACAAAGCAAC---G--A 1667
Query 1637 CGACGTAATACATATAT--GATGTAACAAAAGGATAGTAACTGTGTGTTTGTATTTGttt 1694
|| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1668 CG---TAATACATATATATGATGTAACTAAAGGATAGTAACTGTGTGTTTGTATTTGTTT 1724
Query 1695 tttttttttAA-ATCAGATCCAACATTT---GAGTCATCTCTAATCCTTGTCTGAGTGTG 1750
||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1725 GTTTTTTT-AATATCAGATCCAACATTTTTTGAGTCATCTCTAACCCTTGTCTGAGTGTG 1783
Query 1751 AGATTTGCCTAAAATTGCTGT 1771
|||||||||||||||||||||
Sbjct 1784 AGATTTGCCTAAAATTGCTGT 1804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87599951025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5