BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484013 Length=1771 Score E Sequences producing significant alignments: (Bits) Value AT2G01070.1 | Symbols: | Lung seven transmembrane receptor fam... 2758 0.0 > AT2G01070.1 | Symbols: | Lung seven transmembrane receptor family protein | chr2:75520-77865 FORWARD LENGTH=1807 Length=1807 Score = 2758 bits (1493), Expect = 0.0 Identities = 1676/1761 (95%), Gaps = 26/1761 (1%) Strand=Plus/Plus Query 20 TCCTCGTTCCCCGATGATAATGGATTTGAGAAAACTGATCCACCTATCT-CTGCTGTTGT 78 |||||||||||| ||||||||||||| ||||||||||||| || ||| | |||| ||| Sbjct 61 TCCTCGTTCCCC---GATAATGGATTTGGGAAAACTGATCCAGCTGTCTGC-GCTGCTGT 116 Query 79 GCCCACTTCTTCTATCATTCCACTTTAAAATCGCAGGGGCCTCCGCCCACATCTACCCTT 138 ||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||| ||| Sbjct 117 GCCCATTTCTTCTATCATTACACTTTAGAATCGCTGGGGCCTCCGCCCACATCTACTCTT 176 Query 139 CCCAGCCCTTCCACGATGTCGGTAATTCTCTCCTCCTCTACGGTGGCAGCGAGGGCATCT 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 CCCAGCCCTTCCACGATGTCGGTAATTCTCTCCTCCTCTACGGTGGCAGCGAGGGCATCT 236 Query 199 TCGCCTCTCCCCGATCTTTCATCAGGTTTGAGAACATCACTCTCTGGAGGACAATTACCG 258 |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 237 TCGCCTCTTCCCGATCTTTAATCAGGTTTGAGAACATCACTCTCTGGAGGACAATTACCG 296 Query 259 ATAAAGGCCACCGCAGCAATGGGTTAATTCAATCAGTGATCTTTGAAGCCTCCGATCGTA 318 ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 297 GTAAGGGCCACCGCAGCAATGGGTTAGTTCAAGCAGTGATCTTTGAAGCCTCCGATCGTA 356 Query 319 ACAATATCGGTGGTTCAGCTTACGGCGGCCAAAGATCTATTTGCTGCACTCCAGATCTGG 378 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 357 ACAATATCGGTGGTTCAGCTTACGGAGGCCAAAGATCTATTTGCTGCACTCCAGATCTGG 416 Query 379 CCAAGCTTCAAGGTTGTAAGCAGCGTGAGATCATTAGGATTCCTTCTGCACATGACCCT- 437 ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 417 CCAAGCTTCAAGGCTGTAAGCAGGGTGAGATCATTAGGATTCCTTCTCCACATGACCCTC 476 Query 438 AGATGGCCTATCCTCTTACCCCTCCGCTTCAAAGGAAAACGTTTGTCTGCTAAGATGGAA 497 | |||||||||||||||||| ||||||| ||||||||||| | |||||||||||||| | Sbjct 477 A-ATGGCCTATCCTCTTACCTGTCCGCTTTAAAGGAAAACGCTCGTCTGCTAAGATGGCA 535 Query 498 GACACTGAGATTCTTATCACCAAGACTGGAATCTATAATCTCTTATTCATATCTTGTGAT 557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 GACACTGAGATTCTTATCACCAAGACTGGAATCTATAATCTCTTATTCATATCTTGTGAT 595 Query 558 CCACAACTCAAGGGCCTCACAATGACCGGAAAGACTGTTTGGAAAAATCCCGACGGCTAT 617 |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 596 CCACAACTTAAGGGCCTCAAAATGACCGGAAAGACTGTTTGGAAAAATCCCGACGGCTAT 655 Query 618 CTTCCTGGTAGGATGGCTCCACTCATGAATTTCTATGTCTTTATGTCTCTCGCTTATTTG 677 |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 656 CTTCCTGGTAGGATGGCTCCACTCGTGAATTTCTATGTCTATATGTCTCTCGCTTATTTG 715 Query 678 TTGCTCAGTGCCGTCTGGTTCTTCCAGTATTTGAGGTTCCGGATGGATATATTGCCACTT 737 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 TTGCTCAGTGCCGTCTGGTTCTTCCAGTATTTGAGGTTCCGGATGGATATATTGCCACTT 775 Query 738 CAACATTGCATTACTGCGGTCATTCTTCTCGGATTGCTTGAGATGCTCTTTTGGTACTTG 797 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 776 CAACATTGCATTACTGCCGTCATTCTTCTAGGATTGCTTGAGATGCTCTTTTGGTACTTG 835 Query 798 GATTATGCAAATTTTAA-CAACACGGGGATGAGGCCTTTAGCCCTTACTACATGGGTTGT 856 |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 836 GATTATGCTAATTTTAATCA-CACGGGGATGAGGCCTTTAGCCCTTACTACATGGGTTGT 894 Query 857 TACCATTGGTGCCTTCAGAAAGACTGTTTCCCGCATTCTCATTCTCTGTGTTTCCATGGG 916 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 895 TACCATTGGTGCCTTGAGAAAGACTGTTTCCCGCATTCTCATTCTCTGTGTTTCCATGGG 954 Query 917 ATTTGGGGTTGTCAAATCCACTCTTGGTGGTCTGACTTCTAAAGTCCTCCTTGTTGGAGT 976 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 955 ATTTGGGGTTGTCAAATCTACTCTTGGTGGTCTCACTTCTAAAGTCCTCCTTGTTGGAGT 1014 Query 977 TACTTACTTCATAGCTTCTGAGATGCTTGATATAGCTGAGCACGTTGGCATAATTGACGA 1036 |||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| Sbjct 1015 TACTTACTTCATAGCTTCTGAGATCCTTGATATTGCTGAGCACGTTGGCATCATTGACGA 1074 Query 1037 TATGTCCGGAAGATCAAAACTTTTTCTTGTCCTTCCTGACGCCTTCCTGGATGCATTTCT 1096 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1075 TATGTCCGGAAGATCAAAACTTTTTCTTGTCCTTCCTGACGCCTTCCTCGATGCATTTCT 1134 Query 1097 CATATTGTGGATATTTACCTCTCTTTCCAAAACACTGGAACAGTTACAGATGAAAAGGAC 1156 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1135 CATATTGTGGATATTTACCTCTCTTTCGAAAACACTGGAACAGTTACAGATGAAAAGGAC 1194 Query 1157 CTCGGTGAAGCTGGAAATTTACCGCAAGTTCTCAAATGCTCTTGCTGTGATGGTTGTTGC 1216 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1195 CTCGGTGAAGCTGGAAATTTACCGCAAGTTCTCAAATGCACTCGCTGTGATGGTTGTTGC 1254 Query 1217 CTCTGTTGCATGGATAGTGTATGAGGTGTATTTCAAAGCAACAGATCCATTCAATGAACG 1276 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1255 CTCTGTTGCGTGGATAGTGTATGAGGTGTATTTCAAAGCAACAGATCCATTCAATGAACG 1314 Query 1277 ATGGCAGACTGCTTGGACTATAACTGCCTTCTGGGATGTTATTGCATTCTTGTTACTATG 1336 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1315 ATGGCAGACTGCTTGGACTATAACTGCCTTCTGGGATGTTATCGCATTCTTGTTGCTATG 1374 Query 1337 TATTATTTGCTATCTCTGGACCCCCTCACAGAACTCCCAAAGATATGCATATTCGGGAGA 1396 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1375 TATTATTTGCTATCTCTGGACCCCCTCGCAGAACTCCCAAAGATATGCATATTCGGGAGA 1434 Query 1397 CGTGGATGAAGAAAACGAGGAAGCTCAATCTCTGACAGGGGGGAAGCAAGATGGTGATAT 1456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1435 CGTGGATGAAGAAAACGAGGAAGCTCAATCTCTGACAGGGGGGAAGCAAGATGGTGATAT 1494 Query 1457 TAACTTAGTTAAGCAAGAGAAGAATGCTGAGTCGGACAGGGAAGAAGATGTTGAAGAAGA 1516 || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1495 TAGCTTAGTTAAGCAAGAGAAGAATGCGGAGTCGGACAGGGAAGAAGATGTTGAAGAAGA 1554 Query 1517 TAAGAGAGAGTGAGGATAGTCGGTGTAAAGAAACGACTTGGCATCTGTGTTTGATCATGA 1576 ||| |||||||||||| |||| || || |||||||| ||||||||||||||||||| || Sbjct 1555 TAAAAGAGAGTGAGGAGAGTCAGTATA--GAAACGACGTGGCATCTGTGTTTGATCAAGA 1612 Query 1577 GTTGACGGAAGTATAAATATCAGCAAGAGGTCAGCTATATAGCACAAAGCAACAAAGCTA 1636 ||||||| || |||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1613 GTTGACGAAAATATAAATATCAGCAAGAGGTCAGCTATATAGCACAAAGCAAC---G--A 1667 Query 1637 CGACGTAATACATATAT--GATGTAACAAAAGGATAGTAACTGTGTGTTTGTATTTGttt 1694 || |||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1668 CG---TAATACATATATATGATGTAACTAAAGGATAGTAACTGTGTGTTTGTATTTGTTT 1724 Query 1695 tttttttttAA-ATCAGATCCAACATTT---GAGTCATCTCTAATCCTTGTCTGAGTGTG 1750 ||||||| || |||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1725 GTTTTTTT-AATATCAGATCCAACATTTTTTGAGTCATCTCTAACCCTTGTCTGAGTGTG 1783 Query 1751 AGATTTGCCTAAAATTGCTGT 1771 ||||||||||||||||||||| Sbjct 1784 AGATTTGCCTAAAATTGCTGT 1804 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87599951025 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5