BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484014
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01080.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1367 0.0
> AT2G01080.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr2:77888-79334 FORWARD
LENGTH=1004
Length=1004
Score = 1367 bits (740), Expect = 0.0
Identities = 850/898 (95%), Gaps = 27/898 (3%)
Strand=Plus/Plus
Query 30 AGAGTGGAAAGGGAGAGGGAGCTTCCTGCTTTCACTTATTATGCCTCCTCCTCCTTCTAG 89
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 111 AGAGTGAAAAGGGAGAGGGAGCTTCCTGCTTTCACTTACTATGCCTCCTCCTCCTTCTAG 170
Query 90 TTCTAG-GCCAGGCCTTAACGGAC-ATCCGATTGCTACTCAGAACCAGCAGCCGTATTAC 147
|||||| | |||| || ||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 171 TTCTAGAG-CAGGTCTCAACGG-CGATCCGATTGCTGCTCAGAACCAGCAGCCGTATTAC 228
Query 148 CGGAGCTACTCATCGTCGTCGTCGGCGTCACTGAAGGGATGCTGCTGCTGCTTGTTCTTG 207
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 229 CGGAGCTACTCATCGTCGTCGTCGGCGTCGCTGAAGGGATGCTGCTGCTGCTTGTTCTTG 288
Query 208 CTGTTCGCGTTCCTGGCGCTGCTGGTACTGGCGGTGGTGCTCATAGTAATACTGGCGGTG 267
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 289 CTGTTCGCGTTCCTGGCGCTGCTGGTACTGGCGGTGGTGCTCATCGTAATACTGGCGGTG 348
Query 268 AAGCCGAAGAAGCCGCAGTTCGATCTGCAGCAAGTGGCAGTGGTGTACATGGGAATCTCA 327
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 349 AAGCCGAAGAAGCCGCAGTTCGATCTGCAGCAAGTGGCAGTGGTGTACATGGGGATCTCC 408
Query 328 AACCCAAGCGCTGTTCTGGATCCAACCACCGCCTCCCTCTCCCTCACCATCCGGATGCTC 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 AACCCAAGCGCTGTTCTGGATCCAACCACCGCCTCCCTCTCCCTCACCATCCGGATGCTC 468
Query 388 TTCACCGCCGTCAACCCAAACAAGGTCGGAATCAGGTACGGCGAGTCCAGCTTCACGGTG 447
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 469 TTCACCGCCGTCAACCCAAACAAGGTCGGAATCAGGTACGGTGAGTCCAGCTTCACGGTC 528
Query 448 ATGTACAAAGGCATGCCACTGGGGAGGGCGACGGTGCCTGGATTCTACCAGGATGCGCAC 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 ATGTACAAAGGCATGCCACTGGGGAGGGCGACGGTGCCTGGATTCTACCAGGATGCGCAC 588
Query 508 AGTAC-AAGGAATGTGGAGGCCACCATCTCCGTCGATAGAGTCAATCTTATGCAAGCCCA 566
||||| || ||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 589 AGTACGAA-GAACGTTGAGGCCACCATCTCCGTCGACAGAGTCAATCTTATGCAAGCCCA 647
Query 567 CGCCGCCGATCTCGTCAGAGACGCTTCCTTAAACGACAGAGTGGAGCTCACAGTCCGCGG 626
||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||
Sbjct 648 CGCCGCCGATCTCGTCAGAGATGCTTCCTTGAACGACCGAGTGGAGCTCACAGTCCGCGG 707
Query 627 AGACGTGGGGGCTAAGATCCGAGTCATGAATTTCGATTCACCGGGAGTTCAGGTATCCGT 686
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 708 AGACGTGGGGGCTAAGATCCGAGTCATGAATTTCGATTCACCGGGTGTTCAGGTATCCGT 767
Query 687 GAATTGCGGGATAGGCATTAGTCCCAGAAAGCAAGCTCTCATTTACAAGCAATGTGGCTT 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GAATTGCGGGATAGGCATTAGTCCCAGAAAGCAAGCTCTCATTTACAAGCAATGTGGCTT 827
Query 747 TGATGGCCTCAGCGTCTAATTCCAAAACTGTAACATAata-t-t-at-atatatat-TT- 800
|||||||||||||||||||||||||||||||||||||||| | | || |||||||| ||
Sbjct 828 TGATGGCCTCAGCGTCTAATTCCAAAACTGTAACATAATAATATTATTATATATATATTT 887
Query 801 GTACTGACTACTCCCA---G--------TTGCAAAAAA-GATCCAGCCAAACTGGTAAAG 848
|||||||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct 888 GTACTGACTACTCCCAACTGCAGAGGAGTTGCAAAAAAAGATCCAGCCAAACTGGTAAAG 947
Query 849 AAATGGAACAAGATCATCCATCCTTCCCCTGCCTTTTTTGGAAAACTTTTGTTTCTAC 906
||||| ||||||||| | |||||||||||||||||||||| ||| ||||||||||||
Sbjct 948 AAATGTAACAAGATC--C-ATCCTTCCCCTGCCTTTTTTGGGAAATTTTTGTTTCTAC 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44256283507
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5