BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484021
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01140.1 | Symbols: | Aldolase superfamily protein | chr2:9... 2170 0.0
> AT2G01140.1 | Symbols: | Aldolase superfamily protein | chr2:94811-96655
REVERSE LENGTH=1535
Length=1535
Score = 2170 bits (1175), Expect = 0.0
Identities = 1379/1471 (94%), Gaps = 40/1471 (3%)
Strand=Plus/Plus
Query 1 TGGTGGGAGTAGGTGATGCCAAAGTAGACGACTAC--ATAGTAGTAAAAGTAAATC-GCA 57
||||||||||||||||||||||||||||||||||| |||||||| ||| ||| |
Sbjct 3 TGGTGGGAGTAGGTGATGCCAAAGTAGACGACTACTAATAGTAGT-AAACAAAACCTTTG 61
Query 58 AC-AAACACACTCTCCTCCAAATTCCAGAtctctctctctctctctGTGAGTCCCGCGGA 116
| | |||||||||||||||| ||||| ||||||||| |||| | ||||||||||
Sbjct 62 GCTTTA-ACACTCTCCTCCAAATCCCAGA--TCTCTCTCTGTCTC--T--GTCCCGCGGA 114
Query 117 GTCCCCGAGAGATCGATCACCA-C-C-TTTG-ACCCTTCCTTGTACTACCTATGGCGTCT 172
||||||||||||| |||||||| | | |||| | ||||||||||||||||||||||||||
Sbjct 115 GTCCCCGAGAGATTGATCACCATCACTTTTGTA-CCTTCCTTGTACTACCTATGGCGTCT 173
Query 173 GCTAGCTTCGTTAAGCCTAACACCCTCTCTTCTCCATGGATCGGCCAACGCTCCTTTGCT 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GCTAGCTTCGTTAAGCCTAACACCCTCTCTTCTCCATGGATCGGCCAACGCTCCTTTGCT 233
Query 233 CACACCTCTG------C-T-T-CTCCTCCTCGAGTCTCCTTCGCGATCCGCGCCGGTGCT 283
|||||||||| | | | ||||||||||||||||||||||||||||||||||||||
Sbjct 234 CACACCTCTGCTTCTTCTTCTCCTCCTCCTCGAGTCTCCTTCGCGATCCGCGCCGGTGCT 293
Query 284 TACTCCGACGAGCTTGTTAAAACCGCCAAAAGCGTGGCATCCCCTGGGAGAGGTATCTTG 343
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 294 TACTCCGACGAGCTTGTTAAAACCGCCAAAAGCATTGCATCCCCTGGGAGAGGTATCTTG 353
Query 344 GCGATCGATGAGTCAAATGCGACCTGTGGGAAGAGGCTCGCTTCTATCGGCTTGGATAAC 403
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 354 GCGATCGATGAGTCCAATGCAACCTGTGGGAAGAGGCTTGCTTCTATCGGCTTGGATAAC 413
Query 404 ACTGAGGACAACCGTCAGGCCTACAGGCAACTTCTGCTTACCACTCCTGGCCTCGGCGAT 463
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 ACCGAGGACAACCGTCAGGCCTACAGGCAACTTCTGCTTACCACTCCTGGCCTCGGCGAT 473
Query 464 TACATCTCTGGTGCCATTCTCTTCGAGGAGACTCTTTACCAGTCCACCAAGGACGGCAAG 523
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 474 TACATCTCTGGTTCCATTCTCTTCGAGGAGACTCTTTACCAGTCCACCAAGGACGGTAAG 533
Query 524 ACCTTTGTCGATTGCTTGCGCGATGCCAACATCGTCCCTGGCATCAAAGTTGACAAGGGC 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 ACCTTTGTCGATTGCTTGCGCGATGCCAACATCGTCCCTGGCATCAAAGTTGACAAGGGC 593
Query 584 TTGTCTCCCCT-GCCTGGCTCCAACTACGAGTCTTGGTGCCAAGGCTTGGATGGATTGGC 642
||||||||||| ||| || |||||| | ||||||||||||||||||||||||||||||||
Sbjct 594 TTGTCTCCCCTAGCC-GGTTCCAACGAAGAGTCTTGGTGCCAAGGCTTGGATGGATTGGC 652
Query 643 CTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTGGAGGACAGTGGT 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTGGAGGACAGTGGT 712
Query 703 GAGTGTTCCTTGCGGTCCTTCAGCACTGGCTGTGAAGGAAGCTGCGTGGGGCCTGGCTCG 762
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 713 GAGTGTTCCCTGCGGTCCTTCAGCACTGGCTGTGAAGGAAGCTGCGTGGGGGCTGGCTCG 772
Query 763 CTATGCAGCCATCTCTCAGGAGAATGGTCTTGTGCCCATTGTGGAGCCAGAGATCCTTCT 822
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 773 CTATGCAGCCATCTCTCAGGATAATGGTCTTGTCCCCATTGTGGAGCCAGAGATCCTTCT 832
Query 823 GGACGGGGACCACCCCATTGAGAGGACTCTGGAGGTGGCAGAGAAAGTGTGGTCTGAGGT 882
||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 833 GGACGGGGACCACCCAATAGAGAGGACTCTGGAGGTGGCAGAGAAAGTGTGGTCAGAGGT 892
Query 883 GTTCTTCTACTTGGCCCAGAACAACGTCATGTTTGAGGGCATTCTGTTGAAGCCGAGCAT 942
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GTTCTTCTACTTGGCACAGAACAACGTCATGTTTGAGGGCATTCTGTTGAAGCCGAGCAT 952
Query 943 GGTCACCCCAGGGGCTGAGCACAAGAACAAGGCCTCTCCCGAGACCGTTGCAGAGTTCAC 1002
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 953 GGTCACCCCAGGCGCTGAGCACAAGAACAAGGCCTCTCCCGAGACCGTTGCAGATTTCAC 1012
Query 1003 GCTCACCATGCTCAAAAGGAGGGTTCCTCCGGCTGTCCCAGGAATCATGTTTCTGTCTGG 1062
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1013 GCTCACCATGCTGAAAAGGAGGGTTCCTCCGGCTGTCCCAGGGATCATGTTTCTGTCAGG 1072
Query 1063 AGGACAATCGGAGGCAGAGGCCACACTGAACCTGAACGCCATGAACCAGAGCCCAAACCC 1122
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 AGGACAATCAGAGGCAGAGGCCACACTGAACCTGAACGCCATGAACCAGAGCCCAAACCC 1132
Query 1123 ATGGCATGTGTCCTTCTCCTACGCACGTGCCCTGCAGAACTCCGTGCTGAGGACGTGGCA 1182
|||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||
Sbjct 1133 ATGGCATGTGTCCTTCTCATACGCACGTGCCCTGCAGAACTCCGTGCTCAGAACATGGCA 1192
Query 1183 AGGCAAGCCGGAGAAGATTGAGGCCTCGCAGAAGGCACTGTTGGTGAGGGCAAAGGCCAA 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 AGGCAAGCCGGAGAAGATTGAGGCCTCGCAGAAGGCACTGTTGGTGAGGGCAAAGGCCAA 1252
Query 1243 CTCATTGGCCCAGCTCGGCAAATACTCAGCAGAGGGCGAGAACGAGGATGCCAAGAAAGG 1302
|||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1253 CTCACTGGCCCAGCTCGGCAAATACTCAGCCGAGGGAGAGAACGAGGATGCCAAGAAAGG 1312
Query 1303 AATGTTTGTCAAGGGTTACACCTACTGATT-GTTAATTTCAAAGATCGTAATAAGGAC-- 1359
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1313 AATGTTTGTCAAGGGTTACACCTACTGATTTGTTAATTTCAGAGATCGTAATAAGGATTA 1372
Query 1360 ----CC-TTGTTGTCttttgtctttttttcccttttttttttttttGTCTCTGAGAAAGA 1414
|| |||||||||||||| |||||||||||||||| |||| ||||||||||||||
Sbjct 1373 AGGACCATTGTTGTCTTTTGTTTTTTTTTCCCTTTTTTGTTTT---GTCTCTGAGAAAGA 1429
Query 1415 A-GACACTCATGAGTCGGGATCATATCATAT 1444
| |||| ||| ||||| |||||||||||||
Sbjct 1430 AAGACAGTCACGAGTCACGATCATATCATAT 1460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71184372810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5