BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484022
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01150.1 | Symbols: RHA2B | RING-H2 finger protein 2B | chr2... 691 0.0
> AT2G01150.1 | Symbols: RHA2B | RING-H2 finger protein 2B | chr2:100649-101495
FORWARD LENGTH=847
Length=847
Score = 691 bits (374), Expect = 0.0
Identities = 613/716 (86%), Gaps = 65/716 (9%)
Strand=Plus/Plus
Query 1 AATGGGACTACAAGGTCAGCTCTCCGACGTCTCCTCGGATTCGATACCTCTGATGCTACT 60
|||||||||||||||||||||||||||||| || || |||||||| || |||||||||||
Sbjct 54 AATGGGACTACAAGGTCAGCTCTCCGACGTGTCATCAGATTCGATCCCACTGATGCTACT 113
Query 61 GGCTCTCCTCGCCACTTTCTTCAGGCACGTCCGGTCTCTTCTCCTCCTCCCTTCTTCTGC 120
|||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 114 GGCTCTCCTCGCAACTTTCTTCAGACACGTCCGGTCTCTTCTCCTCTTCCCTTCTTCT-- 171
Query 121 CGCCCCCGTTGTTGTTGTTGTTTTTTCCTCAAACCTCAGCGTCCTCGCCGACCAGCTCAA 180
|||||| |||||||||| || | ||||||||||||||||||||||||||||||||
Sbjct 172 -GCCCCC---GTTGTTGTTG---TTACTTCAAACCTCAGCGTCCTCGCCGACCAGCTCAA 224
Query 181 CCTAAATCGCCTCTTCTCGTACCGCTACTCCGACAACGCAGCCTCCGACTGCATCGTGTG 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 225 CCTAAATCGCCTCTTCTCGTACCGCTACTCCGACAACGCAGCCTCTGACTGCATCGTGTG 284
Query 241 CCTGTCTTCACTCAAGACCGGAGAACAAGTGAGGAAGCTCGATTGCAGACACGTCTTCCA 300
|||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 285 TCTGTCTAAACTCAAGACCGGAGAAGAAGTGAGGAAGCTAGATTGCAGACACGTCTTCCA 344
Query 301 TAAGCAGTGTTTGGAAGGTTGGCTTCAACATCTCAACTTCAATTGCCCGCTCTGTAGATC 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TAAGCAGTGTTTGGAAGGCTGGCTTCAACATCTCAACTTCAATTGCCCGCTCTGTAGATC 404
Query 361 TCCACTGCTACCtcatcatcatcatc-atcatGGCAGTGATACGGCGATCTCAGCCTTCC 419
|||| ||||||||||||||||||| | |||||||||||| || |||||||||||||||
Sbjct 405 TCCATTGCTACCTCATCATCATCAGGGA-CATGGCAGTGATGCGTCGATCTCAGCCTTCC 463
Query 420 CTCTTCGCTCT-CAT-T---G-AT--T---ATT--TTT--ATGTGAACAaagaagaaaga 464
||||||||||| | | | | || | ||| ||| ||||||| ||||||||||||
Sbjct 464 CTCTTCGCTCTACCTCTACTGCATCATCTCATTGATTTTTATGTGAAGAAAGAAGAAAGA 523
Query 465 a-a--g-a-gaga-a-gaagaTGGAGGGAGGATG-TTTTTGATCTCA-CGGCCCTTCTCC 515
| | | | |||| | |||||||||||||||||| ||||| || | | | || ||||||
Sbjct 524 AGAAAGCAAGAGAGAAGAAGATGGAGGGAGGATGCTTTTTTATTT-ATCTTCC-TTCTCC 581
Query 516 TCTTTCCtttttttAGGAAAAGAATATTATTTCTTACTA-A-A-GCT-G---CAGATTG- 567
|||||||||||| |||| |||| | ||||||||||||| | | | | | | ||
Sbjct 582 TCTTTCCTTTTT--AGGAGAAGATTCTTATTTCTTACTACAGAAGATTGATTCTTCTTAT 639
Query 568 AT-TCT-TCatatata---t-ctatat--a--tat-TTTT-GAGGAATCTCAGATCGGA- 614
|| ||| | ||||||| | |||||| | ||| |||| ||||||||||||||||||
Sbjct 640 ATATCTAT-ATATATAACCTTCTATATTTAGCTATGTTTTTGAGGAATCTCAGATCGGAA 698
Query 615 GAGAGGTCCTTTTGTTTTTCAGATTTCCGCATGCAGTGTAAATTCTTAATATGAAA 670
|||||||||||||||||||||||||||| | | | |||||||||||| |||||||
Sbjct 699 GAGAGGTCCTTTTGTTTTTCAGATTTCCAC-T-C--TGTAAATTCTTAGTATGAAA 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32401024815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5