BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484023
Length=1718
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01170.1 | Symbols: BAT1 | bidirectional amino acid transpor... 2569 0.0
> AT2G01170.1 | Symbols: BAT1 | bidirectional amino acid transporter
1 | chr2:102194-104549 REVERSE LENGTH=1808
Length=1808
Score = 2569 bits (1391), Expect = 0.0
Identities = 1499/1552 (97%), Gaps = 3/1552 (0%)
Strand=Plus/Plus
Query 36 TGGGCGGCGATCAATCCTTCTATGTTCCCGCCATGGATTCCGGCCAAGTCCGCCTCAAGG 95
||||||||||||||||| | | |||||||| |||||||||||||||||||||||||||||
Sbjct 95 TGGGCGGCGATCAATCC-T-T-TGTTCCCGTCATGGATTCCGGCCAAGTCCGCCTCAAGG 151
Query 96 AGCTCGGCTACAAGCAAGAGCTCAAGCGCGATCTCTCGGTCTTCTCCAATTTCGCCATCT 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 AGCTCGGCTACAAGCAAGAGCTCAAGCGCGATCTCTCGGTCTTCTCCAATTTCGCCATCT 211
Query 156 CCTTCTCCATCATATCGGTGCTCACTGGTATCACCACCACCTACAACACCGGCTTGAGGT 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 212 CCTTCTCCATCATATCGGTGCTCACTGGTATCACCACCACCTACAACACCGGCTTAAGAT 271
Query 216 TCGGCGGCACCGTCACTCTGGTCTACGGATGGTTCCTGGCCGGCTCCTTCACAATGTGTG 275
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 272 TCGGCGGCACTGTCACTCTGGTCTACGGATGGTTCCTGGCCGGCTCCTTCACAATGTGCG 331
Query 276 TTGGGTTATCGATGGCCGAGATCTGCTCCTCTTACCCTACCTCCGGCGGTCTCTACTACT 335
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 332 TTGGGTTATCTATGGCCGAGATCTGCTCCTCTTACCCTACCTCCGGTGGTCTCTACTACT 391
Query 336 GGAGTGCTATGCTCGCCGGCCCTCGTTGGGCTCCTCTTGCCTCTTGGATGACCGGCTGGT 395
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 392 GGAGTGCTATGCTCGCTGGCCCTCGTTGGGCTCCTCTTGCCTCTTGGATGACTGGCTGGT 451
Query 396 TCAACATCGTTGGTCAGTGGGCAGTGACGGCCAGCGTTGACTTCTCTCTCGCACAGCTGA 455
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 452 TCAACATCGTTGGTCAGTGGGCAGTGACGGCCAGCGTTGACTTCTCTCTGGCACAGTTGA 511
Query 456 TTCAGGTCATCGTCCTTCTCTCCACCGGCGGTCGAAACGGCGGCGGATATAAAGGATCAG 515
||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 512 TTCAGGTGATCGTCCTTCTCTCCACCGGCGGTAGAAACGGCGGCGGTTATAAAGGATCAG 571
Query 516 ACTTTGTTGTGATTGGCATCCATGGTGGGATCCTCTTCATCCATGCTCTTCTCAACAGCC 575
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 572 ACTTTGTTGTGATTGGTATCCATGGTGGGATCCTCTTCATCCACGCTCTTCTCAACAGCC 631
Query 576 TCCCCATCTCCGTCTTGTCTTTCATTGGACAGCTTGCTGCTCTCTGGAATCTCCTCGGGG 635
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 632 TCCCCATCTCCGTCTTGTCTTTCATTGGACAGCTTGCTGCTCTTTGGAATCTCCTCGGGG 691
Query 636 TTTTGGTGCTCATGATTCTGATTCCTTTGGTTTCTACGGAAAGAGCCACCACTAAGTTTG 695
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 692 TTTTGGTGCTCATGATTCTGATTCCTTTGGTTTCTACGGAAAGAGCAACCACTAAGTTTG 751
Query 696 TCTTCACCAATTTCAACACTGATAATGGCCTTGGCATCACCAGCTACGCTTATATATTCG 755
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 752 TCTTTACCAATTTCAACACTGATAATGGCCTTGGCATCACCAGCTACGCTTACATATTCG 811
Query 756 TTTTGGGGCTCCTCATGAGCCAGTACACCATTACAGGGTATGATGCATCTGCCCACATGA 815
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 812 TTTTGGGACTCCTCATGAGCCAGTACACCATTACAGGGTATGATGCCTCTGCCCACATGA 871
Query 816 CAGAGGAGACGGTCGACGCAGACAAGAACGGGCCAAGAGGAATAATCAGTGCAATTGGTA 875
|||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 872 CAGAAGAGACAGTCGACGCAGACAAGAACGGGCCCAGAGGAATAATCAGTGCAATTGGTA 931
Query 876 TATCAATTCTGTTTGGATGGGGTTACATATTAGGCATAAGCTATGCGGTCACAGACATAC 935
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 932 TATCAATTCTGTTTGGATGGGGTTATATATTGGGCATAAGCTATGCCGTCACAGACATAC 991
Query 936 CTTCTCTTCTGAGTGAGACCAACAACTCTGGTGGGTATGCCATTGCTGAGATCTTCTACT 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 CTTCTCTTCTGAGTGAGACCAACAACTCTGGTGGGTATGCCATTGCTGAGATCTTCTACT 1051
Query 996 TAGCTTTCAAGAATCGGTTTGGGAGCGGTACTGGTGGAATCGTGTGCTTAGGTATTGTTG 1055
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1052 TAGCTTTCAAGAATAGGTTTGGGAGCGGTACTGGTGGAATCGTGTGCTTAGGCGTTGTTG 1111
Query 1056 CGGTTGCTGTATTTTTCTGCGGCATGAGCTCTGTCACCAGCAATTCCAGGATGGCTTATG 1115
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1112 CGGTTGCTGTGTTTTTCTGTGGCATGAGCTCTGTCACCAGCAATTCCAGGATGGCGTATG 1171
Query 1116 CGTTTTCGAGAGATGGAGCGATGCCAATGTCGCCGTTATGGCACAAAGTGAACAGCAGAG 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 CGTTTTCGAGAGATGGAGCGATGCCAATGTCGCCGTTATGGCACAAAGTGAACAGCAGAG 1231
Query 1176 AGGTCCCCATTAATGCGGTTTGGCTCTCTGCTCTCATATCATTTTGTATGGCCCTTACCT 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1232 AGGTCCCCATTAATGCGGTTTGGCTCTCTGCTCTCATATCATTTTGTATGGCCCTCACCT 1291
Query 1236 CACTGGGGAGCATAGTGGCGTTCCAAGCAATGGTGTCGATAGCAACGATTGGACTGTACA 1295
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1292 CACTGGGGAGCATAGTGGCGTTCCAAGCAATGGTGTCGATCGCAACGATTGGACTGTACA 1351
Query 1296 TAGCATACGCAATCCCGATTATTTTGAGAGTGACGCTTGCTCGCAACACCTTCGTGCCTG 1355
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1352 TAGCATACGCAATCCCGATTATATTGAGAGTGACGCTTGCGCGCAACACCTTCGTACCTG 1411
Query 1356 GACCATTCAGCCTGGGGAAGTACGGAATGGTAGTCGGATGGGTGGCAGTCATGTGGGTTG 1415
|||||||||||||||| || ||||||||||||||||| |||||||||||| |||||||||
Sbjct 1412 GACCATTCAGCCTGGGAAAATACGGAATGGTAGTCGGGTGGGTGGCAGTCCTGTGGGTTG 1471
Query 1416 TAACCATATCAGTCCTCTTCTCCTTGCCCGTGGCATATCCCATAACCGCGGAGACACTCA 1475
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 1472 TAACCATATCAGTCCTCTTCTCCTTACCCGTGGCATATCCCATAACAGCAGAGACACTCA 1531
Query 1476 ACTACACTCCGGTGGCAGTGGCTGGTTTGGTAGCCATAACCCTCTCATATTGGCTTTTCA 1535
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1532 ACTACACTCCGGTGGCAGTTGCTGGTTTGGTGGCCATAACCCTCTCATATTGGCTTTTCA 1591
Query 1536 GTGCCCGGCACTGGTTTACGGGTCCCGTCTCCAACATTCTTAGCTGAAACAA 1587
||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1592 GTGCCCGCCACTGGTTTACGGGTCCCATCTCCAACATTCTTAGCTGAAACAA 1643
Score = 113 bits (61), Expect = 5e-24
Identities = 93/107 (87%), Gaps = 8/107 (7%)
Strand=Plus/Plus
Query 1617 CATACAACTAGCAAC-A-ACATC--TCACATTTTTATTTCATCATCACAACTCTAAACTT 1672
||| |||| |||||| | ||||| |||||||||||||||||| ||||||| |||||||
Sbjct 1705 CATTCAACAAGCAACAACACATCTGTCACATTTTTATTTCATCGCCACAACTTTAAACTT 1764
Query 1673 TAAACC-AATGGAATGATAATAATCAACACAAAGTGTTGGCATGGGC 1718
|||| | |||||||| | | |||||||||||||||||||||||||||
Sbjct 1765 TAAAGCGAATGGAAT-A-A-TAATCAACACAAAGTGTTGGCATGGGC 1808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84939322140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5