BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484026
Length=1406
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01180.1 | Symbols: ATPAP1, PAP1, LPP1, ATLPP1 | phosphatidi... 1821 0.0
> AT2G01180.1 | Symbols: ATPAP1, PAP1, LPP1, ATLPP1 | phosphatidic
acid phosphatase 1 | chr2:106900-108803 REVERSE LENGTH=1514
Length=1514
Score = 1821 bits (986), Expect = 0.0
Identities = 1172/1261 (93%), Gaps = 16/1261 (1%)
Strand=Plus/Plus
Query 155 TTCTCTTCCTGATGACAATTGGATCGTTTTTCTCTTCTCTCATATTCTGGCGCAATTCTC 214
||| ||| ||||||||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct 238 TTCACTTTCTGATGACAATAGGGTCGTTTTTCTCTTCTCTCTTATTCTGGCGCAATTCTC 297
Query 215 AGGACCAGGAGGCGCAGAGAGGAAGGATTCAGGAGATAGATCTTGGAGTTCACACTATAA 274
|||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||
Sbjct 298 AGGACCAGGAGGCGCAGAGAGGGAGGATGCAGGAGATAGATCTTAGTGTTCACACTATAA 357
Query 275 AGACCCATGGAGGCAGAGTCGCCTCTAAACACAAGCACGATTGGATTATACTCGTCATCT 334
|| |||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 358 AGTCCCATGGAGGAAGAGTCGCTTCTAAACACAAGCACGATTGGATCATACTCGTCATCT 417
Query 335 TGATTGCCATCGAGATCGGCTTGAACCTCATCTCTCCTTTCTACCGCTACGTGGGAAAGG 394
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 418 TGATTGCCATCGAGATAGGCTTGAACCTCATCTCTCCTTTCTACCGCTACGTGGGAAAAG 477
Query 395 ACATGATGACAGACCTCAAATACCCTTTCAAGGACAACACCGTCCCGATCTGGTCTGTCC 454
|||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 478 ACATGATGACTGACCTCAAGTACCCTTTCAAGGACAACACCGTACCTATCTGGTCTGTCC 537
Query 455 CGGTGTACGCGGTGCTTCTTCCGGTCGTACTGTTCATCTGCTTCTACCTTAAGAGGAGAT 514
| |||||||| ||||||||||| || || ||||| ||||||||||||| ||||||| ||
Sbjct 538 CTGTGTACGCTGTGCTTCTTCCCATCATAGTGTTCGTCTGCTTCTACCTGAAGAGGACAT 597
Query 515 GTGTGTACGATCTGCACCACAGCATCCTCGGGCTGCTCTTCGCCGTCTTGATAACTGGTG 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GTGTGTACGATCTGCACCACAGCATCCTCGGGCTGCTCTTCGCCGTCTTGATAACTGGTG 657
Query 575 TCATCACTGACTCCATCAAGGTAGCCACCGGACGCCCTCGTCCTAACTTCTACTGGCGCT 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TCATCACTGACTCCATCAAGGTAGCCACCGGACGCCCTCGTCCTAACTTCTACTGGCGCT 717
Query 635 GCTTCCCCGACGGCAAAGAGCTGTATGATGCGTTGGGAGGTGTGATATGCCACGGCAAGG 694
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 718 GCTTCCCCGACGGCAAAGAGCTGTATGATGCGTTGGGAGGTGTGGTATGCCACGGCAAGG 777
Query 695 CAGCTGAGGTCAAGGAAGGCCACAAGAGCTTCCCGAGCGGACACACTTCCTGGTCCTTTG 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CAGCTGAGGTCAAGGAAGGCCACAAGAGCTTCCCGAGCGGACACACTTCCTGGTCCTTTG 837
Query 755 CGGGGCTCACCTTCCTCTCCCTTTACCTCTCTGGCAAAATCAAGGCCTTCAACGGTGAAG 814
||||||| || ||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 838 CGGGGCTTACATTCCTTTCCCTTTACCTCTCTGGCAAAATCAAGGCCTTCAACAATGAAG 897
Query 815 GACACGTGGCTAAGCTCTGCCTCGTGATCTTCCCTCTGCTTGCCGCTTGCCTCGTGGGGA 874
|||| ||||| || ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 898 GACATGTGGCGAAACTCTGCCTCGTGATCTTCCCTCTGCTTGCCGCTTGTCTTGTGGGGA 957
Query 875 TATCTCGTGTGGATGACTACTGGCACCACTGGCAAGACGTCTTCGCTGGAGCTCTCATCG 934
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 958 TATCTCGTGTGGATGACTACTGGCACCACTGGCAAGATGTCTTCGCAGGAGCTCTCATTG 1017
Query 935 GCATCCTTGTCGCCGCCTTCTGCTACCGTCAGTTCTACCCCAACCCTTACCACGAAGAGG 994
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1018 GCACCCTTGTAGCCGCCTTCTGCTACCGTCAGTTCTACCCCAACCCTTACCACGAAGAAG 1077
Query 995 GATGGGGTCCCTACGCCTATTTCAAGGCTGCCCAAGAACGAGGAGTCCCTGTGGCCTCCT 1054
|||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 1078 GATGGGGTCCCTACGCCTATTTCAAGGCAGCTCAAGAACGAGGAGTCCCTGTGACCTCCT 1137
Query 1055 CCCAGAACGGAGATGCCTTGAGGGCAATGTCTCTGCAGATGGATTCAACTTCTCTCGAAA 1114
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1138 CCCAAAACGGAGATGCCTTGAGGGCTATGTCTCTGCAGATGGATTCAACATCTCTCGAAA 1197
Query 1115 ACATGGAATCTGGCACTTCCACGGCTCCCAGATGATCCTTGTCTTTTATTATTTGATTCA 1174
|||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||
Sbjct 1198 ACATGGAATCTGGCACTTCCACCGCTCCCAGATGATCCTCCTCTCTTATTATTTGATTCA 1257
Query 1175 TTATTTGGTTTTTCATTTTG----G-CCGTCGTCGTGAGATTGTGGATGGTGTAGCTACA 1229
|||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||
Sbjct 1258 TTATTTGGTTTTTCATTTTGATTTGGCCGTCGTCGTGAGATTGTGAATGGTGTAGCTACA 1317
Query 1230 TTACATATATATATGTGTATTCAAACCTCTACTTGTGCCCTTACATTT--GTAAATCCAC 1287
| || | ||| ||||||||||| |||||||||| || |||||||| ||||||||||
Sbjct 1318 T-AC-TGTAT----GTGTATTCAAAACTCTACTTGTACCATTACATTTTTGTAAATCCAC 1371
Query 1288 TCTTCATGAAATTGGCGTTTTCTCTGGTGTCCGAGAGGCTTGGA-CATTCGCC-AGTCTC 1345
|||||||||||||| |||||| ||||||||||||||||||||| | ||| | ||||
Sbjct 1372 TCTTCATGAAATTGACGTTTT-TCTGGTGTCCGAGAGGCTTGGGTCGCTCGAATAATCTC 1430
Query 1346 GTCTAATAGACTAACACGGGTCTAGTGAACACAGTATTTACATGTCTGTGGTCTAAACTG 1405
||| |||||||||| |||| |||||||||||| |||||||||||| |||| |||||||||
Sbjct 1431 GTCCAATAGACTAATACGGCTCTAGTGAACACGGTATTTACATGTTTGTGATCTAAACTG 1490
Query 1406 A 1406
|
Sbjct 1491 A 1491
Score = 130 bits (70), Expect = 4e-29
Identities = 136/165 (82%), Gaps = 15/165 (9%)
Strand=Plus/Plus
Query 1 TTCTTCTATCAAACCGTCAAGTGGGGaaacaaaaacaaaacaaaaacTTGGAAGTTTAAC 60
|||||||||||||||||||||| ||| ||||||||| |||||| | |||||||||
Sbjct 55 TTCTTCTATCAAACCGTCAAGTTGGG------AAACAAAAC-AAAACTCGCAAGTTTAAC 107
Query 61 AACGCGTCTTCTCCCTCCTCCTC--CTAATTATATCAGTCCATCA-TATTAAGAGAGA-G 116
|||||||||||| |||||||||| | | ||| | | || || | | || | |||
Sbjct 108 AACGCGTCTTCTACCTCCTCCTCATCGGACTAT-TTA-TCTAT-AGTCTT-CGTTAGATC 163
Query 117 AATTCCTCTGTTTTACTCCTAAGTTTCGAGATCCACATTTCTCTT 161
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 AATTCCTCTGTTTTACTCCTAAGTTTCGAGATCCACATTTCTCTT 208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69276752100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5