BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484029
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01200.2 | Symbols: IAA32 | indole-3-acetic acid inducible 3... 1288 0.0
> AT2G01200.2 | Symbols: IAA32 | indole-3-acetic acid inducible
32 | chr2:118018-119342 FORWARD LENGTH=872
Length=872
Score = 1288 bits (697), Expect = 0.0
Identities = 825/885 (93%), Gaps = 15/885 (2%)
Strand=Plus/Plus
Query 1 CTCTCACAAGCAACACAGAGCCTCCCACCTTGAATCGAGTTGCCAATAGTCTCAAAT-AT 59
|||||| |||||||||||||||| ||| ||||||||||||| |||||||| || || ||
Sbjct 1 CTCTCATAAGCAACACAGAGCCT--CACTTTGAATCGAGTTGTCAATAGTCCCAGATAAT 58
Query 60 ATTTCTGACAGAGTTCACTGAGTTGAGATGTGATTTTTGTGCATCAGAAGCATTGGCTGG 119
||||||| ||| |||||| |||||||||||||| |||||||||||||||||||||| |
Sbjct 59 ATTTCTG-CAGTGTTCACAGAGTTGAGATGTGA-CTTTGTGCATCAGAAGCATTGGCAGA 116
Query 120 CCTGGTTGGTTTACAAAATCTGAACCAAATCTCTCTCTGTTAAATAAAGAAGCATCAATG 179
||||||||| |||||| ||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 117 CCTGGTTGGATTACAAGATCTGAACCAAATCTCTCTCTGTGAAATAAAAAAGCATCAATG 176
Query 180 GACCCAAACACAACTGCAGACTTCTTCCAAGGGTCTTCCAAGTTTCATACATATTACTCG 239
|||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 177 GACCCAAACACACCTGCAGACTTCTTCAAAGGTTCTTCCAAGTTTCATACATATTACTCA 236
Query 240 CAGACTAAGAAGGGTGGTGGGGTAATCGATCTAGGCCTCAGCCTTAGCACCATACAACAT 299
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 237 CAGACCAAAAAGGGTGGTGGGGTAATCGATCTAGGCCTCAGCCTTAGGACCATACAACAT 296
Query 300 GAAACTTACCTCCCACCGGCGCGAGTGATAGGTCTCGACGGGTATGGAGAGCTCATAGAC 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 297 GAAACTTACCTCCCACCGGCGCGAATGATAGGTCTCGACGGGTATGGAGAGCTCATAGAC 356
Query 360 TGGTCGCAGCAGCCCAGCTATAGA-AGCATTACACAGTTGAAGAGTGAGGACACTGGTCA 418
|||| | |||||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 357 TGGT--C-GCAGCCCAGCTATA-ACAGCATTACACAGTTGAAGAGTGAGGACACTGGACA 412
Query 419 CAAAAGACTTGCCCATGGATATTACAATAATGAAGAAGAGAGCAGAGGAAAATATGCTTA 478
| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 413 CCAAAGACTTGCCCAAGGATATTACAATAATGAAGGAGAGAGCAGAGGAAAATATGCTTA 472
Query 479 TGTAAAGGTAAATCTGGATGGCCTAGTGGTAGGGCGAAAGGTTTGCCTTCTCGATCAAGG 538
||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||
Sbjct 473 CGTAAAGGTAAATCTGGATGGCCTAGTGGTAGGGCGCAAGGTTTGCCTTGTTGATCAAGG 532
Query 539 AGCTTACTCAACTCTTGCTCTTCAGCTCAATGATATGTTTGGGATGCAGACCGTGTCTGG 598
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 533 AGCTTACGCAACTCTTGCTCTTCAGCTCAATGATATGTTTGGGATGCAGACCGTGTCGGG 592
Query 599 ATTGAGGTTGTTTCAGACTGAGTCTGAGTTCTCTTTGGTCTACAGAGACAGAGAAGGTAT 658
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 593 ATTGAGGTTGTTCCAGACTGAGTCTGAGTTCTCTTTGGTCTACAGAGACAGAGAAGGCAT 652
Query 659 TTGGAGGAATGTTGGTGATGTTCCATGGAAGGAGTTTGTGGAAAGCGTGGATCGGATGCG 718
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 653 TTGGAGGAATGTTGGGGATGTTCCATGGAAGGAGTTTGTCGAAAGCGTGGATCGGATGCG 712
Query 719 AATCGCAAGAAGAAACGATGCTCTTTTTCCCTTTTAAGCTTCAAAGTCCAAGCTTCTCCT 778
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
Sbjct 713 AATCGCAAGAAGAAACGATGCTCTTCTTCCCTTTTAAGCTTTTAAGTCCAAGCTTCT--T 770
Query 779 CTTCTGGGGCGTTCACTGTTTATCTAAGATCCAAATTATCTCACTTGTGGTTCTAATATT 838
|| ||||||||||||| ||||||||||||||||||| |||||||||||||||| | ||
Sbjct 771 CT---GGGGCGTTCACTGATTATCTAAGATCCAAATTAGCTCACTTGTGGTTCTATTGTT 827
Query 839 CAACATCTGATGTAACGGAAGCTTTAAGCTATAAATACGATTATG 883
||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 828 CAATATCTGATGTAATGGAAGCTTTAAGCTATAAATACGATTATG 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43100898126
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5