BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484030
Length=2265
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01210.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3559 0.0
> AT2G01210.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr2:119441-121846 REVERSE LENGTH=2331
Length=2331
Score = 3559 bits (1927), Expect = 0.0
Identities = 2134/2237 (95%), Gaps = 1/2237 (0%)
Strand=Plus/Plus
Query 30 CCATCACAC-TCTTTTTGTTCTAATTTGCATCTGAAAATGTTTGCGTCGCTGATCATCTT 88
||| ||| | ||||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 76 CCAACACTCGTCTTTTTGTTCTAATTTGCATCTGATAATGTTGGCCTCGCTGATCATCTT 135
Query 89 CGTTGCTCTTCTCTGCAATGTGACTCTAATAAGTGGCTTAAACGACGAAGGCTTCGCGCT 148
||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct 136 CGTTGCTCTTCTCTGCAATGTGACTGTCATAAGTGGCTTAAACGACGAAGGCTTTGCGCT 195
Query 149 CTTGACGTTTAAGCAGAGCGTTCACGATGATCCTACTGGTTCCCTTAGCAATTGGAACTC 208
||| |||||||| || |||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct 196 CTTAACGTTTAAACAAAGCGTTCACGATGATCCTACAGGTTCTCTTAACAATTGGAACTC 255
Query 209 ATCAGACGAGGACGCCTGTTCGTGGAATGGTGTTACTTGCAAAGAACTCAGGGTGGTGTC 268
|||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 256 ATCAGACGAGAACGCCTGTTCGTGGAACGGTGTAACTTGCAAAGAACTCAGGGTGGTGTC 315
Query 269 TCTAAGCATTCCAAGGAAGAGCCTTTACGGTTCTCTCCCTTCGTCTCTAGGGTTTCTCTC 328
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 316 TCTAAGCATTCCAAGGAAGAATCTTTACGGTTCTCTCCCTTCGTCTCTAGGGTTTCTCTC 375
Query 329 CAGTCTCCGTCACTTGAAACTCCGCAGCAATAGGTTTTATGGGTCGTTGCCTATTCAGCT 388
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 376 CAGTCTCCGTCACTTGAATCTCCGGAGCAATAGGTTTTATGGGTCGTTGCCTATTCAGCT 435
Query 389 TTTCCAGCTTCAGGGTCTCCAAAGTCTAGTCCTTTACGGCAATTCCTTTGATGGGTCGTT 448
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 436 TTTCCATCTTCAGGGACTCCAAAGTCTAGTCCTTTACGGCAATTCCTTTGATGGGTCATT 495
Query 449 GTCGGACGAAATCGGTAAGCTTAAGCTTCTTCAGACCTTAGATTTGTCGCAGAATCTCTT 508
|||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 496 GTCGGAAGAGATCGGTAAGCTGAAGCTTCTTCAGACCTTAGATTTGTCACAGAATCTCTT 555
Query 509 CAACGGGTCGTTACCGCTTTCGATTCTGCAATGCAACAGACTGAGAACACTCGATGTCAG 568
||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||
Sbjct 556 CAACGGGTCGTTACCACTTTCGATTCTGCAATGCAACAGACTTAAAACACTCGATGTCAG 615
Query 569 CAGAAACAACTTGTCTGGTGCTTTGCCTGATGGGTTTGGCTCAGCCTTCGTCTCTCTGGA 628
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 616 CAGAAACAACTTGTCTGGTCCTTTGCCTGATGGGTTTGGCTCAGCGTTCGTCTCTCTGGA 675
Query 629 GAAACTCGACCTCGCCTTCAACCAATTCAACGGCTCCATCCCCAGCGACATCGGAAACCT 688
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 676 GAAACTCGACCTCGCCTTCAACCAATTCAACGGCTCCATCCCCAGCGACATTGGAAACCT 735
Query 689 CTCCAACCTCCAAGGAACTGCTGATTTCTCTCATAATCACTTCACCGGCTCAATCCCACC 748
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 CTCCAACCTTCAAGGAACTGCTGATTTCTCTCATAATCACTTCACCGGCTCAATCCCACC 795
Query 749 TGCTCTGGGAGATCTTCCTGAAAAGGTTTACATTGATCTCACTTTCAACAATCTCTCCGG 808
||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 796 TGCCCTTGGAGATCTTCCTGAAAAGGTTTACATTGATCTCACTTTCAATAATCTCTCCGG 855
Query 809 TCCCATTCCTCAAACTGGTGCTCTGATGAACAGAGGACCAACGGCGTTTATCGGCAACAC 868
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 856 TCCCATTCCTCAAACCGGTGCTCTTATGAACAGAGGACCAACAGCGTTTATCGGCAACAC 915
Query 869 TGGGCTATGCGGCCCGCCATTGAAGGACCTTTGCCCAGGATATGAGCTTGGCCTCAATGC 928
||| |||||||| || ||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 916 TGGTCTATGCGGGCCTCCATTGAAGGACCTTTGCCAAGGATATCAACTTGGCCTCAATGC 975
Query 929 CTCTTACCCTTTTATCCCAAGCAACAACCCACCTGAGGATTCTGATACTAGTAACTCTGA 988
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 976 CTCTTACCCTTTTATCCCAAGCAACAACCCACCTGAGGATTCTGATAGTACTAACTCTGA 1035
Query 989 AACCAAACAGAAATCAAGTGGTTTGAGCAAAAGCGCCGTCATTGCCATTGTTCTCTGCGA 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 AACCAAACAGAAATCAAGTGGTTTGAGCAAAAGCGCCGTCATTGCCATTGTTCTCTGCGA 1095
Query 1049 CGTTTTTGGTATCTGCCTTGTGGGTTTGCTTTTCACTTACTGCTACTCAAAGTTGTGCGC 1108
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1096 CGTGTTTGGTATCTGCCTTGTGGGTTTGCTTTTCACTTACTGCTACTCAAAGTTCTGCGC 1155
Query 1109 TTGTAACCGCGAGAACCAGTTCGGATTCGAGAAAGAATCCAAGAAAAGGGCTGCAGAGTG 1168
|||||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||
Sbjct 1156 TTGTAACCGCGAGAACCAATTCGGAGTCGAGAAAGAATCCAAGAAAAGGGCTTCTGAGTG 1215
Query 1169 TCTTTGTTTCCGTAAAGACGAATCCGAAACGCCATCTGAAAACGTGGAGCATTGCGACAT 1228
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 TCTGTGTTTCCGTAAAGACGAATCCGAAACGCCATCTGAAAACGTGGAGCATTGCGACAT 1275
Query 1229 TGTTGCCCTTGACGCTCTGGTTGCGTTTAACCTGGAGGAGCTGCTAAAGGCCTCGGCTTT 1288
|||| |||| ||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct 1276 TGTTCCCCTCGACGCTCAGGTTGCGTTTAACCTGGAGGAGCTGCTAAAGGCGTCAGCTTT 1335
Query 1289 CGTTCTGGGCAAGAGCGGAATCGGCATTGTGTACAAAGTGGTTCTCGAGAACGGGCTCAC 1348
||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1336 CGTTCTGGGGAAGAGCGGAATCGGAATTGTCTACAAAGTGGTTCTAGAGAACGGGCTCAC 1395
Query 1349 ACTGGCCGTCCGGAGATTGGGTGAAGGAGGATCTCAGAGATTCAAGGAATTTCAGACAGA 1408
||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1396 ACTGGCCGTACGGAGATTGGGTGAAGGAGGGTCTCAGAGATTCAAGGAGTTTCAGACAGA 1455
Query 1409 AGTTGAAGCCATAGGGAAAATACGACATCCTAACATTGCTAGTCTTCGAGCTTATTATTG 1468
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1456 AGTTGAAGCCATAGGGAAACTAAAACATCCTAACATTGCTAGTCTTCGAGCTTATTATTG 1515
Query 1469 GTCTGTGGATGAGAAGCTTCTCATCTACGACTATGTTCCCAACGGTAACCTTGCAACCGC 1528
|||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1516 GTCTGTCGATGAAAAGCTTCTCATCTACGACTATGTTTCCAACGGTAACCTCGCAACCGC 1575
Query 1529 CCTCCACGGAAAGCTGGGGATGGTGACTGTAGCTCCGTTGACATGGTCTGAACGGCTGAG 1588
|||||||||||||| ||||||| |||| | |||||||||||||||||||||||| ||||
Sbjct 1576 CCTCCACGGAAAGCCGGGGATGATGACCATCGCTCCGTTGACATGGTCTGAACGGTTGAG 1635
Query 1589 GATAGTGAAAGGGATTGCGACAGGGCTTGTTTATCTGCACGAGTTTAGTCCCAAGAAATA 1648
|||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1636 GATAATGAAAGGGATTGCTACAGGGCTTGTTTATCTGCATGAGTTTAGTCCCAAGAAATA 1695
Query 1649 CGTCCATGGAGATCTCAAGCCCAGCAACATTCTTATTGGACAGGACATGGAACCTAAGAT 1708
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1696 CGTCCATGGAGATCTCAAGCCAAGCAACATTCTCATTGGACAGGACATGGAACCTAAGAT 1755
Query 1709 CTCTGATTTTGGACTAGCACGGTTGGCTAACATTGCTGGAGGATCTTCTCCGACCATACA 1768
||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1756 CTCAGATTTTGGACTAGCACGGTTAGCTAACATCGCTGGAGGATCTTCTCCGACCATACA 1815
Query 1769 GTCTAACAGAATCATCCAAACGGATCAACAGCCGCAAGAGAGGCAACAGCACCATCACAA 1828
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1816 GTCTAACAGAATCATCCAAACGGATCAACAGCCGCAAGAGAGGCAACAACACCATCACAA 1875
Query 1829 GAGCGTATCTTCGGAGTTCACTGCTCACTCTTCGTCTGGATCCTACTATCAAGCACCTGA 1888
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1876 GAGCGTATCTTCGGAGTTCACTGCTCACTCTTCTTCTGGATCCTACTATCAAGCACCTGA 1935
Query 1889 GACTCTCAAGATGGTAAAACCGTCACAGAAGTGGGATGTTTACTCTTATGGGATCATTTT 1948
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1936 GACTCTCAAGATGGTAAAACCTTCACAGAAGTGGGATGTTTACTCTTATGGGATCATTTT 1995
Query 1949 ACTGGAATTGATAGCGGGTAGGTCTCCAGCAGTGGAGGTGGGGACATCGGAAATGGATCT 2008
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1996 ACTGGAATTGATAGCGGGTAGGTCTCCCGCAGTGGAGGTGGGGACATCGGAAATGGATCT 2055
Query 2009 AGTGCGGTGGGTACAGGTATGCATTGAGGAGAAGAAACCATTGTGTGATGTTCTTGATCC 2068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2056 AGTGCGGTGGGTACAGGTATGCATTGAGGAGAAGAAACCATTGTGTGATGTTCTTGATCC 2115
Query 2069 TTGTTTGGCTCCTGAGGCAGATAAGGAAGACGAGATTGTCGCTGTTCTTAAGATTGCAAT 2128
||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 2116 TTGTTTGGCTCCTGAGGCAGAGACGGAAGACGAGATTGTTGCTGTTCTTAAGATTGCAAT 2175
Query 2129 CAGTTGCGTGAATAGCAGTCCAGAGAAAAGGCCTACCATGAGGCACGTTTCTGATACTCT 2188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2176 CAGTTGCGTGAATAGCAGTCCAGAGAAAAGGCCTACCATGAGGCACGTTTCTGATACGCT 2235
Query 2189 TGACAGATTACCCGTGGCCGGCGATTGAGAGATCTAGAGATTGCACATAAAGCTTGTTTT 2248
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2236 CGACAGATTACCCGTGGCCGGCGATTGAGACATCTAGAGATTGCACATAAAGCTTGTTTT 2295
Query 2249 AAAAGATGAAGCTGCAA 2265
||| |||||||||||
Sbjct 2296 GAAATTTGAAGCTGCAA 2312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112399020255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5