BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484033

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G01240.1 | Symbols:  | Reticulon family protein | chr2:12844...   684    0.0  


> AT2G01240.1 | Symbols:  | Reticulon family protein | chr2:128440-129256 
REVERSE LENGTH=483
Length=483

 Score =  684 bits (370),  Expect = 0.0
 Identities = 449/487 (92%), Gaps = 5/487 (1%)
 Strand=Plus/Plus

Query  1    ATGTCAGTGGAAGGACAGGATAAACTCGGGGATAACACTTGTAACGGCCACACTTTTCTG  60
            ||||| ||||||||||| ||||||||| |||||||||||||||| ||||||||| |||||
Sbjct  1    ATGTCTGTGGAAGGACAAGATAAACTCAGGGATAACACTTGTAATGGCCACACTCTTCTG  60

Query  61   GTTCCTCTTAGAGATCATGGAGGCTCGATTTGTTCCGCTTCTCTGCTCAATCTTGTTACT  120
            ||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct  61   GTTCCTCTTGGAGTTCATGGAAGCTCGATTAGTTCCGCTTCTCTGCTCAATCTTGTTACT  120

Query  121  CCTCATGCTCCTCCTTTTCCTTTGGGCCAACTAAATCAACCAGATTCCCCACTTAAAGCC  180
            |||||||||| | || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct  121  CCTCATGCTCATTCTCTTCCTTTGGGCCAATTAAATCAACCAGATTCCCCACTTAAAGCC  180

Query  181  TTGTTTTTAAAGATGGAGGGCCATCTCCTTATGATGTATGAGATTGCATATGGGAAAGAC  240
            ||||||| || ||||||||| |||||||| ||| | ||||||||||||||||||||||||
Sbjct  181  TTGTTTTCAATGATGGAGGGGCATCTCCTCATGCTCTATGAGATTGCATATGGGAAAGAC  240

Query  241  AACAAAACCTTTCTTAAGACCATCCTTTATGTGACCACCATACACATCATTGGGAGCTAC  300
            |||||||| ||||| |||||||||||||||||| ||| |||| ||| |||||||||||||
Sbjct  241  AACAAAACATTTCTAAAGACCATCCTTTATGTGGCCATCATATACAACATTGGGAGCTAC  300

Query  301  ATCAGCCTCCTCACAATTTTGTATATATGCTTAGTCTGCTCGATGACGATTCCGGTT-TT  359
            |||||||||||||||||||||||||||||||| || ||||||||||| || |||||| ||
Sbjct  301  ATCAGCCTCCTCACAATTTTGTATATATGCTTGGTTTGCTCGATGACAATCCCGGTTGTT  360

Query  360  GTACATGCAATTTCAAGAGGTCATTGACAGTTTCATGGGGAAGGTATCAGAAGAGAAGGA  419
             |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct  361  -TACATGCAATTTCAAGAGCTCATTGACAGTTTCATGGGGAAAGTATCAGAAGAGAAGAA  419

Query  420  CAAGTTACTTGAAGTATTCAAAACCAAAGTTGTCTCTAAAATTCCTAGGGCCCCCAAGGT  479
            ||| |||||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct  420  CAATTTACTTGAAGTATTCAAA-C-AA-GTTGTCTCTAAAATTCCTAGGGCCCCCAAGGT  476

Query  480  GGAGTAG  486
            |||||||
Sbjct  477  GGAGTAG  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23157941767


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5