BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484041
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01275.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 1657 0.0
AT2G01270.1 | Symbols: AtQSOX2, QSOX2 | quiescin-sulfhydryl oxi... 76.8 4e-13
> AT2G01275.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr2:142498-144524 REVERSE LENGTH=1080
Length=1080
Score = 1657 bits (897), Expect = 0.0
Identities = 1021/1078 (95%), Gaps = 19/1078 (2%)
Strand=Plus/Plus
Query 1 TTAGCGTCAGAAAAAACTAAATACGAttctcttcttctaagtctcctttttcttcgcttt 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 TTAGCGTCAGAATAAACTAAATACGATTCTCTTCTTCTAAGTCTCCTTTTTCTTCGCTTT 64
Query 61 tccacttgttcttcttctttctttctttctttcAAAAGCAGAAGAAAACGCTACAAAGCT 120
||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 65 TCCACTTCTTCTTCTTC-TTCTTTCTTTCTTTCAAAAGCAGAAGAAAACGGTACAAAGCT 123
Query 121 CTTTTGCT-CT---TCTCCTAACTTTTGGCTGCAAGCAAGTTTCTTTCTTTACCGTGA-A 175
|||||||| || |||||||| ||||||||| | | |||||||||| |||||||| |
Sbjct 124 CTTTTGCTCCTCCATCTCCTAAAATTTGGCTGC-A-C--GTTTCTTTCTATACCGTGAGA 179
Query 176 ACAGAGAACATGGGAGATCATTTCGTGCTGCTGGTGGATCGGTTGATAACAGAGTCCACG 235
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 ACAGAGAACATGGGAGATCATTTCGTGCTGCTGGTGGATCGGTTGATAACAGAATCCACG 239
Query 236 ATTGAGGCTGCGATTCAGAGCAGGAACCAGATGTTGCAAGCCAATTTACCCGTTGAGGAA 295
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 240 ATTGAGGCTGCGATTCAGAGCAGGAACCAGATGTTGCAAGCTAATATACCCGTTGAGGAA 299
Query 296 TGTACAATCTTGGACGAGAAAACACTTGAGATGCTGCGTAACGGAGATTTGTCAATGGCT 355
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTACAATCTTGGACGATAAAACACTTGAGATGCTGCGTAACGGAGATTTGTCAATGGCT 359
Query 356 CAGTGCAGGATTTGTCACGACGAGGACTTGGATTCCAACATGGAGACTCCTTGTTCTTGC 415
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGTGCAGGATCTGTCACGACGAGGACTTGGATTCCAACATGGAGACTCCTTGTTCTTGC 419
Query 416 AGCGGCAGCGTCAAGTTTGCGCATCGGAGGTGCGTACAGCGATGGTGCAACGAGAAAGGT 475
|||||||||||||||| ||||||| |||||||||||||| ||||||| ||||||||||||
Sbjct 420 AGCGGCAGCGTCAAGTATGCGCATAGGAGGTGCGTACAGAGATGGTGTAACGAGAAAGGT 479
Query 476 GATACCACCTGCGAGATTTGCCATCAGGAATTCAAGCCGGATTATACAGCGCCGCCTCCG 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATACCACCTGCGAGATTTGCCATCAGGAATTCAAGCCGGATTATACAGCGCCGCCTCCG 539
Query 536 TTGCTAGAGTTGGGTCATGTTCCTCTCCATTTCAGGGGAAACTGGGGAATCTCTCAACGG 595
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTGCTAGAGTTAGGCCATGTTCCTCTCCATTTCAGGGGAAACTGGGGAATCTCTCAACGG 599
Query 596 GAGCATCGTTTCATCACAGTTGTACCTGCTGATTCAACTTTCATCGACCAACAATATCCT 655
||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||||||
Sbjct 600 GAGCATCGTTTCATCACAGTTGTACCTGCTGATTCCACTTTTATTGACCAACCATATCCT 659
Query 656 CTTTCTTCCACCACAAGCTTCATCTGTTGCCGTTCCCTTGTTCTCATCTTCATGGCTCTT 715
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 660 CTTTCTTCCACCACAAGCTTCATCTGTTGCCGTTCCCTTGTTCTCATTTTCATGGCTCTT 719
Query 716 CTCATTCTCCGGCATACCCTTCCCTT-AGTCCTCTCTGGATCAAACCTCCATGTCTTCCC 774
||||||||||| |||||||| ||||| ||||||| | ||||||||||| |||||||||||
Sbjct 720 CTCATTCTCCGACATACCCT-CCCTTTAGTCCTCACCGGATCAAACCTTCATGTCTTCCC 778
Query 775 TTTGTTCACGTTGTTATTTCTGAGAGTACTCGGAATCATGCTACCCATCTACGTTGTCAC 834
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 TTTGTTCACGTTGTTATTTCTGAGAATACTCGGAATCATGCTACCCATCTACGTTGTCAC 838
Query 835 CAAAGCAGTCGCCACCTGCCGCCGCCATCCTCAGACCTTAGACACCTCTCACTCTGATGA 894
|||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| |||||
Sbjct 839 CAAAGCAGTCGCCACCTGCCGCCGCCATTCTCGGACCTTAGACACCTCTCCCTCCGATGA 898
Query 895 TTCATCATCTGATGAAGAAACAGATTCATGGCGCTTGCCTCAAACTCAATCTTACATTAT 954
|||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 899 TTCATC-T--GATGAAGAAACAGATTCATGGCGCTTGCCTCAAACGCAATCTTACATTAT 955
Query 955 AGGCGTACGATGAGCACTC-TTCTTTTCTTTCACAGACATACACACAAAGTCAAATGACA 1013
||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct 956 AGGCGTACGATGATCACTCATTCTTTTCTTTCACACACA--CACACAAAGTCAAATGACA 1013
Query 1014 CTGTAAATAATAATTTCTGGCTTATACATGTAAAATGTTGGATTGATTCAACAGATTG 1071
||||||||| ||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1014 CTGTAAATA-TAACTTCTGGCTTATACATGTAAAATGTTGGATTGGTTTAACAGATTG 1070
> AT2G01270.1 | Symbols: AtQSOX2, QSOX2 | quiescin-sulfhydryl oxidase
2 | chr2:139331-142560 FORWARD LENGTH=2033
Length=2033
Score = 76.8 bits (41), Expect = 4e-13
Identities = 50/54 (93%), Gaps = 1/54 (2%)
Strand=Plus/Minus
Query 1018 AAATAATAATTTCTGGCTTATACATGTAAAATGTTGGATTGATTCAACAGATTG 1071
|||| |||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2033 AAAT-ATAACTTCTGGCTTATACATGTAAAATGTTGGATTGGTTTAACAGATTG 1981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5