BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484042
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01290.1 | Symbols: RPI2 | ribose-5-phosphate isomerase 2 | ... 1424 0.0
AT2G01280.1 | Symbols: MEE65 | Cyclin/Brf1-like TBP-binding pro... 499 2e-140
> AT2G01290.1 | Symbols: RPI2 | ribose-5-phosphate isomerase 2
| chr2:148919-150382 REVERSE LENGTH=1464
Length=1464
Score = 1424 bits (771), Expect = 0.0
Identities = 921/991 (93%), Gaps = 20/991 (2%)
Strand=Plus/Plus
Query 228 ATGGCGCTTGCGTATGATCCTCTCTTCATTTCATCGGACAAATCTTTGTCCGCCTTTGAT 287
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 394 ATGGCGCTTGCGTATGATCCTCTCTTCATTACATCGGACAAATCTTTGTCCGCCTTTGAT 453
Query 288 GTTG-C-C-TCACCGCCACATCCCATGATTTTAACGCAAGACCAGCTCAAACGCATCGCC 344
|||| | | |||||||| || ||||||| |||||| |||||| |||||||||| ||||||
Sbjct 454 GTTGCCTCTTCACCGCCTCAGCCCATGAATTTAACACAAGACGAGCTCAAACGTATCGCC 513
Query 345 GCTTACAAAGCCGTCGAATTCGTCGAATCCGGCATGGTCCTCGGCCTCGGAACCGGCTCC 404
|||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 514 GCTTACAAAGCCGTGGAATTCGTCGAGTCCGGCATGGTTCTCGGTCTCGGAACCGGCTCC 573
Query 405 ACCGCCAAACACGCCGTCGACCGCATCGGCGAGCTTCTCCGTCAAGGCAAACTCGAGAAC 464
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 574 ACCGCCAAACACGCCGTCGACCGAATCGGCGAGCTTCTCCGTCAAGGCAAACTCGAGAAC 633
Query 465 ATCGTTGGTATACCAACCTCGAAGAAGACGCAGGAGCAGGCTCTGTCTCTCGGCATCCCT 524
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 634 ATCGTTGGTATACCAACGTCTAAGAAGACGCAGGAGCAGGCTCTGTCTCTCGGCATCCCT 693
Query 525 CTCTCTGATCTCGACGCACACCCTGTCATCGATCTCTCCATCGACGGCGCCGACGAGGTC 584
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 694 CTCTCTGATCTCGACGCACACCCTGTCATCGATCTCTCCATCGACGGCGCAGACGAGGTC 753
Query 585 GACCCTTATCTCAACCTCGTGAAAGGCAGAGGAGGGTCTCTGCTTCGGGAGAAGATGATC 644
||||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 754 GACCCTTTTCTCAACCTGGTAAAAGGCAGAGGAGGGTCTCTGCTTCGAGAGAAGATGATC 813
Query 645 GAAGGAGCTTCTAAGAAGTTCGTGGTCATCGTTGACGAGTCCAAGATGGTGAAGCACATC 704
|||||||||||||||||||| ||||| || |||||||| ||||||||||||||||| ||
Sbjct 814 GAAGGAGCTTCTAAGAAGTTTGTGGTGATTGTTGACGACTCCAAGATGGTGAAGCATATT 873
Query 705 GGTGGAAGCAAGCTTGCTCTTCCGGTGGAGATAGTGCCCTTTTGCTGGAAATTCACGGCG 764
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 874 GGTGGAAGCAAGCTTGCTCTTCCGGTGGAGATAGTGCCCTTTTGCTGGAAGTTCACGGCG 933
Query 765 GAGAAGCTCCGGAGTCTGCTGGAAGGATACGGGTGTGAAGCGAATCTCCGATTGGGAGAG 824
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 934 GAGAAGCTCCGGAGTCTGCTGGAAGGATACGGGTGTGAAGCGAATCTTCGGTTGGGAGAG 993
Query 825 AAAGGTAAGCCCTTTGTGACAGACAATGGGAATTACATAGTGGATATGCATTTGGAAGAG 884
||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 994 AAAGGGAAGGCCTTTGTGACAGACAATGGGAATTACATAGTGGATATGCATGTGGAAGAG 1053
Query 885 GATATGGGAGATTTGGGAGCAGTGAGTGATGCGATTCTGAGGCTTCCAGGAGTAGTGGAG 944
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1054 GATATGGGAGATTTGGGAGCAGTGAGTGATGCGATTCTGAGGCTACCGGGAGTAGTGGAA 1113
Query 945 CATGGAATGTTTCTGGATATGGCTTCTACTGTTATCATTGCAGGTGAGCTTGGTGTTAAG 1004
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 CATGGGATGTTTCTGGATATGGCTTCTACTGTTATCATTGCAGGTGAGCTTGGTGTTAAG 1173
Query 1005 ATCAAGCACAAACA---ACACA-ACACCTC-C-TCTTCTTAGGTTGATTTTGGCCTGTTT 1058
|||||| ||||||| | ||| ||||| | | |||||| | ||||||||||||| ||
Sbjct 1174 ATCAAGAACAAACACTGAAACACACACCACACCTCTTCTC-G-TTGATTTTGGCCT-TTA 1230
Query 1059 TGTATTAGGAGATAGAGGATTATGGTTTGCTGCTCTATGATTTAGATGATATGAGATT-G 1117
|||||||||||| |||||||||||||||||| || ||| |||||||||||||||||| |
Sbjct 1231 TGTATTAGGAGACAGAGGATTATGGTTTGCT-CT--ATGGTTTAGATGATATGAGATTAG 1287
Query 1118 GTTTCGGATGATGTCACTGTGAGGAGGA-GATATGACTGACTTTTCACGGAGTTTTGGAT 1176
|||| ||||||||||||||||||||||| || |||||| ||||| || |||||||||||
Sbjct 1288 GTTTTGGATGATGTCACTGTGAGGAGGATGA-ATGACTTTCTTTTGACAGAGTTTTGGAT 1346
Query 1177 TGCAT-GACATTGTCACCATCATCATCAATC 1206
|||| ||||| ||| ||||||||||||||
Sbjct 1347 -GCATTGACATCGTCGTCATCATCATCAATC 1376
Score = 122 bits (66), Expect = 6e-27
Identities = 174/219 (79%), Gaps = 36/219 (16%)
Strand=Plus/Plus
Query 15 TCTTGTTCTTCTTCGTCCA--CTTTACTTTGTTTTATCTTTTCTCCGCCACCACACAAAC 72
|||| ||||||||||| || ||| ||||| ||| |||||||||||||||||||||||
Sbjct 24 TCTTCTTCTTCTTCGTTCAGTCTTCACTTT-CTTT-TCTTTTCTCCGCCACCACACAAAT 81
Query 73 ACATTCTTTC-TTCTTTGTAAGTTGCATATTTCTCACGCTATTCTTCATCTCTATACATA 131
|||||| ||| |||||||||| | || |||||||||||||| ||| | |||
Sbjct 82 ACATTC-TTCATTCTTTGTAA----C----TT-TCACGCTATTCTTC--CTC---A-ATA 125
Query 132 TACACACACAATTCATTCGACCTTCTCTATTCATTTTCCCTAATTTCTC--AAATCTTAT 189
| ||||||||||||| |||| |||| || | ||||||||| |||||||||
Sbjct 126 T---------ATTCATTCGACCTCCTCTCTTCA--TT-CTTAATTTCTCAAAAATCTTAT 173
Query 190 CTTTC-CCCTCATTTTTCCCGTCGAGGGTTCCTTCATCT 227
||||| |||||||||||||||||||||||||||| ||||
Sbjct 174 CTTTCTCCCTCATTTTTCCCGTCGAGGGTTCCTTAATCT 212
> AT2G01280.1 | Symbols: MEE65 | Cyclin/Brf1-like TBP-binding protein
| chr2:145676-149394 FORWARD LENGTH=2257
Length=2257
Score = 499 bits (270), Expect = 2e-140
Identities = 357/396 (90%), Gaps = 17/396 (4%)
Strand=Plus/Minus
Query 820 GAGAGAAAGGTAAGCCCTTTGTGACAGACAATGGGAATTACATAGTGGATATGCATTTGG 879
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2257 GAGAGAAAGGGAAGGCCTTTGTGACAGACAATGGGAATTACATAGTGGATATGCATGTGG 2198
Query 880 AAGAGGATATGGGAGATTTGGGAGCAGTGAGTGATGCGATTCTGAGGCTTCCAGGAGTAG 939
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 2197 AAGAGGATATGGGAGATTTGGGAGCAGTGAGTGATGCGATTCTGAGGCTACCGGGAGTAG 2138
Query 940 TGGAGCATGGAATGTTTCTGGATATGGCTTCTACTGTTATCATTGCAGGTGAGCTTGGTG 999
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2137 TGGAACATGGGATGTTTCTGGATATGGCTTCTACTGTTATCATTGCAGGTGAGCTTGGTG 2078
Query 1000 TTAAGATCAAGCACAAACA---ACACA-ACACCTC-C-TCTTCTTAGGTTGATTTTGGCC 1053
||||||||||| ||||||| | ||| ||||| | | |||||| | ||||||||||||
Sbjct 2077 TTAAGATCAAGAACAAACACTGAAACACACACCACACCTCTTCTC-G-TTGATTTTGGCC 2020
Query 1054 TGTTTTGTATTAGGAGATAGAGGATTATGGTTTGCTGCTCTATGATTTAGATGATATGAG 1113
| || |||||||||||| |||||||||||||||||| || ||| |||||||||||||||
Sbjct 2019 T-TTATGTATTAGGAGACAGAGGATTATGGTTTGCT-CT--ATGGTTTAGATGATATGAG 1964
Query 1114 ATT-GGTTTCGGATGATGTCACTGTGAGGAGGA-GATATGACTGACTTTTCACGGAGTTT 1171
||| ||||| ||||||||||||||||||||||| || |||||| ||||| || ||||||
Sbjct 1963 ATTAGGTTTTGGATGATGTCACTGTGAGGAGGATGA-ATGACTTTCTTTTGACAGAGTTT 1905
Query 1172 TGGATTGCAT-GACATTGTCACCATCATCATCAATC 1206
||||| |||| ||||| ||| ||||||||||||||
Sbjct 1904 TGGAT-GCATTGACATCGTCGTCATCATCATCAATC 1870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62047873620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5