BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484052
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01350.1 | Symbols: QPT | quinolinate phoshoribosyltransfera... 1818 0.0
> AT2G01350.1 | Symbols: QPT | quinolinate phoshoribosyltransferase
| chr2:165141-167259 REVERSE LENGTH=1288
Length=1288
Score = 1818 bits (984), Expect = 0.0
Identities = 1173/1259 (93%), Gaps = 34/1259 (3%)
Strand=Plus/Plus
Query 1 TCTACAATGATCTCTGTCTCTCGATTCTTGTCGCCTCAATTCTACGCAATTCAAAGGAGC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 45 TCTACAATGATCTCTGTCTCTCGATTCTTGTCGCCTCAATTCTACGCAATTCCAAGGAGC 104
Query 61 TTCGTGAAAATGTCTGCTTCTGCGACTCAAACGGCCGGAGAAATTTCCATGGCGATCAAG 120
||||| |||||||||||||| ||||||||||||||||||||| |||| |||| |||||||
Sbjct 105 TTCGTAAAAATGTCTGCTTCAGCGACTCAAACGGCCGGAGAAGTTTCAATGGGGATCAAG 164
Query 121 CCTCCTTCACATCCC-ACTTACGATTTGAAAGCCGTCATCAAATTAGCCCTAGCTGAAGA 179
||||||||||| ||| ||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 165 CCTCCTTCACA-CCCTACTTACGATTTGAAAGCTGTTATCAAACTAGCCCTAGCTGAAGA 223
Query 180 TGCTGGTCATACAGGAGATGTAACGTGTATGGCTACGATACCGTTTGATTTGGAAGTGGA 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 224 TGCTGGTCATACAGGAGATGTAACGTGTATGGCTACGATACCGTTTGATATGGAAGTGGA 283
Query 240 AGCTTATTTCTTGGCTAAGGAAGATGGTATTGTCGCTGGAATTGCTCTTGCTGACATGAT 299
||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 284 AGCTTATTTCTTGGCCAAGGAAGATGGTATTGTTGCTGGAGTTGCTCTTGCTGACATGAT 343
Query 300 TTTTGAACAAGTTGATCCCTCCTTGAAGATTGAATGGATGCGAAAGGATGGAGATTATGT 359
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 344 TTTTGAACATGTTGATCCCTCCTTGAAGGTTGAATGGATGCGAAAGGATGGAGATTATGT 403
Query 360 TCATAAAGGGTTGAAGTTTGGGAAAGTATCAGGGAATGCACACAAGATTGTTGTTGCTGA 419
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 404 TCATAAAGGATTGAAGTTTGGGAAAGTATCAGGGAATGCACATAAGATTGTTGTTGCTGA 463
Query 420 AAGAGTTGTGCTCAACTTTATGCAGAGGATGAGCGGAATTGCTACCCTTACCAAGTTAAT 479
||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 464 AAGAGTTTTGCTCAACTTTATGCAGAGGATGAGTGGAATTGCAACCCTTACCAAGTTAAT 523
Query 480 GGCAGATGCTGCATCCCCTGCACGTATACTGGAGACAAGAAAAACTGCTCCTGGTTTGCG 539
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 524 GGCAGATGCTGCATCCCCTGCATGTATACTGGAGACAAGAAAAACTGCTCCTGGTTTGCG 583
Query 540 GTTGGTAGACAAATGGGCGGTGCTGATTGGTGGAGGGAGGAATCATAGGATGGGATTATT 599
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 584 GTTGGTAGATAAATGGGCGGTACTGATTGGTGGAGGGAGGAATCATAGGATGGGGTTATT 643
Query 600 TGATATGGTGATGATCAAAGATAACCATATCTCAGCTGCAGGAGGTATAGTAAATGCCAT 659
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 644 TGATATGGTGATGATAAAAGATAACCATATCTCAGCTGCAGGCGGTATAGTAAACGCCGT 703
Query 660 CAAATCCGTTGACGAATATCTAAAGCAAAAGAATCTCGAAATGGATGTGGAGGTAGAGAC 719
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 704 CAAATCCGTAGACGAATATCTAAAGCAAAAGAATCTCGAAATGGATGTAGAGGTGGAGAC 763
Query 720 -ACGAACGCTTGAGGAAGTGAAGGAAGTGTTAGAGTATGTTAGTGGCTCCGAGAGTCGGT 778
| | |||||||||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct 764 GA-GGACGCTTGAGGAAGTGAAGGAAGTGTTAGAGTATGCTAGTGGATCCGAGACTCGGT 822
Query 779 TAACGAGAATAATGCTGGATAATATGGTTGTGCCATTAGAGAATGGAGACGTCGATGTCA 838
| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 823 TGACGAGAATAATGCTGGATAATATGGTTGTGCCCTTAGAGAATGGAGATGTCGATGTCA 882
Query 839 CAATGCTTAAAGATGCGGTAGAGCTAATCAACGGGAAATTCGAGACAGAGGCTTCGGGAA 898
|||||||||||||||||||||||||||||||||||| ||||||||||||||| || || |
Sbjct 883 CAATGCTTAAAGATGCGGTAGAGCTAATCAACGGGAGATTCGAGACAGAGGCATCAGGCA 942
Query 899 ATGTTACCCTTGAGACAGTACACAAGATCGGACAGAGTGGAGTTACATTCATTAGCAGTG 958
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 ATGTTACACTTGAGACAGTACACAAGATCGGACAGAGTGGAGTTACATTCATTAGCAGTG 1002
Query 959 GAGCTCTTACGCATTCGGTGAAAGCGCTAGACATATCTCTAAAGATCGATACAGAGTTGG 1018
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1003 GAGCTCTTACGCATTCGGTGAAAGCACTAGACATATCTCTGAAGATCGATACAGAGTTGG 1062
Query 1019 CTCTCGAGGTGGGAAGAAGGACAAAACGAGCATAGAGAGCATCGTCTTCCTCGTATTAAT 1078
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
Sbjct 1063 CTCTCGAGGTGGGAAGAAGGACCAAACGAGCATAGAGAACATCGTCTTCCTCGTAT-A-- 1119
Query 1079 TCTTACTTGCTTTCTT-TTAATTCCCGGGAAACATATAATCAATAAGGAGAGA--CAGAC 1135
||||||| |||| || || |||| ||||||||| |||||||||||| |||| || ||
Sbjct 1120 -CTTACTTTCTTT-TTATT--TTCC-GGGAAACATGTAATCAATAAGGTGAGAGGCAAAC 1174
Query 1136 GAATGAATCTGCCTATAATAATAACTAATGTTTCTTCTACAAATGTAATAATA--A---- 1189
|||||||||||||||||| ||| ||| ||||||||||||| |||||||||| |
Sbjct 1175 GAATGAATCTGCCTATAA-AATGACT---GTTTCTTCTACAA-TGTAATAATAGTAAAAC 1229
Query 1190 T----A--A-AATAGAGTGGAGACATGGATGAATAT-TGAATAAGCTTTCTCTCAAACT 1240
| | | |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1230 TCTTGAGTACAATAGAGTGGAGACATGGATGAATATCTGAATAAGCTTTCTCTCAAACT 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60943461630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5