BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484055
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01410.1 | Symbols: | NHL domain-containing protein | chr2:... 1934 0.0
AT2G01400.1 | Symbols: | unknown protein; Has 19 Blast hits to... 721 0.0
> AT2G01410.1 | Symbols: | NHL domain-containing protein | chr2:175040-176407
REVERSE LENGTH=1368
Length=1368
Score = 1934 bits (1047), Expect = 0.0
Identities = 1261/1360 (93%), Gaps = 32/1360 (2%)
Strand=Plus/Plus
Query 1 TTTTCCTAAATCGAAATCACAGATGAAAGCGAACATGTCGTC-T--TCTTCCACTCGATG 57
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 14 TTTTCCTAAATCGAAATCACAGATGAAAGCGAACATGTCGTCGTCGTCTTCCACTCGATA 73
Query 58 CAGATCCTTCTTCGTCTTCCCAATTCTCTTCGCCGTCGTGTTGTTTGGACTTCTGATCCC 117
||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| ||
Sbjct 74 CAGATCCTTCTTCGTCTTCCCAATTCTCTTCGCCGTCTTGTTCCTGGGACTTCTGATTCC 133
Query 118 CTCCTCCGCCGATAAGCGCCACGTTATCAACTTCCGATCGCCGGGACTCTACCCGGAGGG 177
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 CTCCTCCGCCGATAACCGCCACGTTATCAACTTCCGATCGCCGGGACTCTACCCGGAGGG 193
Query 178 ACTAACCTGGGATCCAAGGGACCAACATTTTCTAGTCGGTTCCCTCCACAGCCGCACAAT 237
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 194 ACTAACCTGGGATCCAAGGGACCAGCATTTTCTAGTCGGTTCTCTCCACAGCCGCACAAT 253
Query 238 TCATTCCGTCTCCGACGCTGGAGTTATCGAAACCCTAATTTCCGATCTCGATCTACCGGA 297
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 254 TCATTCCGTCTCCGACGCTGGAGTCATCGAAACCCTAATCTCCGATCTCGATCTACCGGA 313
Query 298 GAACGCCACTATCCTCGGCCTCGCCGTTGACTCCACTAATCGCCGTCTGCTTGCCTGCAT 357
|||| ||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 314 GAACTCCACTATCCTCGGTCTCGCCGTTGACTCTACTAATCGCCGTCTCCTTGCCTGTAT 373
Query 358 CCACAGTTCGCCGCCTCTCCCTCCCTTCAGTGCCCTAGCCGCCTACGATCTCCGCAGCGG 417
||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 374 CCAGAGTTTGCCGCCTCTCCCTCCCTTCAGTGCCCTAGCCTCCTACGATCTCCGCAGCGG 433
Query 418 CGGCCGTCGTGTATTCCTCTCTCCTCTCCCGTCGCTTCCCGGGGACGACGAAGACATCGC 477
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 434 AGGCCGTCGTGTATTCCTCTCTCCTCTCCCGTCTCTTCCCGGAGACGACGAAGACATCGC 493
Query 478 TCGTGATATCGCCAATGACGTGGCGGTTGATTTCAAAGGCAACGCTTACGTCACCAACTC 537
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TCGTGATGTCGCCAATGACGTGGCGGTTGATTTCAAAGGCAACGCTTACGTCACCAACTC 553
Query 538 AGCGAAAAACTTCATCTGGAAAGTCGATCGCGACGGCGCTGCCTCGATCTTCTCCAGATC 597
||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| |||
Sbjct 554 AGCCAAAAACTTCATCTGGAAAGTCGATCGCGACGGCGCAGCTTCGATCTTCTCCAAATC 613
Query 598 GCCGTTGTTCAATTCGCAGCCTGTGGCAGCAGACGCGGACGCAAGTTTCCGCGATTGCGG 657
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 614 GCCGTTGTTCAATTCGCAGCCTGTGGCGGCAGACGCGGACGCAAGTTTCCGCGATTGCGG 673
Query 658 CCTGAACGGGATCGTTTACATCAGCAAAGGATACCTCCTGGTGGTGCAGAGCAACACAGG 717
| ||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 674 CTTGAACGGGATCGTGTACATCAGCAAAGGCTATCTCCTGGTGGTGCAGAGCAACACAGG 733
Query 718 GAAGGTATTCAAAGTAGACGAAGAGAGCGGGAATGCGAGGCTGGTGTTGCTGAACGGAGA 777
||||||||||||||| |||||||| |||||||||||||||||||||||| | ||||| ||
Sbjct 734 GAAGGTATTCAAAGTTGACGAAGATAGCGGGAATGCGAGGCTGGTGTTGTTAAACGGTGA 793
Query 778 TCTGATTGCGGCGGACGGGATGACGAGGAGACGGAGGGACAGCACAGTCATGGTGGTGTC 837
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 794 TCTGATTGCGGCGGACGGGATGACGAGGAGACGGAGAGACGGCACAGTCATGGTGGTGTC 853
Query 838 GCAGAAGAAGCTTTGGTTACTCAAGAGCCAAGACAGTTGGAGTGAAGGAGTGGTATATGA 897
||||||||||||||||||||||| |||||||| || ||||| |||||||| || || ||
Sbjct 854 ACAGAAGAAGCTTTGGTTACTCAAAAGCCAAGATAGCTGGAGCGAAGGAGTTGTTTACGA 913
Query 898 CGAAATTGACCTCGACCTCGAGGGCTTTCCGACGGCGGTGACGGTGGCGGAACGGGATAG 957
|||||||||||||||| |||||||||||||||| ||||||||||| |||| |||||||||
Sbjct 914 CGAAATTGACCTCGACATCGAGGGCTTTCCGACCGCGGTGACGGTTGCGGGACGGGATAG 973
Query 958 GATATACGTGTTATACGGGAGAGTGATGGAGGGGATAATGGG-A--AGTTACAAAGAAGA 1014
|||||| ||||| || |||||||||||||||||||||||||| | ||||||||||||||
Sbjct 974 GATATATGTGTTGTATGGGAGAGTGATGGAGGGGATAATGGGAAGTAGTTACAAAGAAGA 1033
Query 1015 AGGACCGAGGGAATGGTTTGGTATAGAAGAGGTTTGGTCGGAGAAGGAAGGTGGTGAAGA 1074
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 AGGAGCGAGGGAATGGTTTGGTATAGAAGAGGTTTGGTCGGAGAAGGAAGGTGGTGAAGA 1093
Query 1075 TAAGATTTGGTTGTATGTGTTGATCGGATTTGGTTTCGCTTACTTCTGTTTCTGGAGGTT 1134
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 1094 TAAGATTTGGTTGTATGTGTTGATTGGATTTGGCTTCGCTTACTTCTGTTTCTGGAGATT 1153
Query 1135 TCAGATGAAGAAGCTCATCACAAACATGGACAAAAAGATCACTTAG-T-T-C---A-T-- 1185
||||||||||||||||||||||||||||||||| |||||||||||| | | | | |
Sbjct 1154 TCAGATGAAGAAGCTCATCACAAACATGGACAAGAAGATCACTTAGCTCTTCTCTACTTG 1213
Query 1186 -------CATC-T-T-ACACGTTTTGTAATAGGAAACCTAGCACAGAACAGCAGCATGTA 1235
|||| | | |||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1214 TGTATTTCATCATCTTACACGTTTTGTAGTAGGAAACCTAGCACAGAACAGCA---TGTA 1270
Query 1236 GTGTTGAAATGAAAGCTATTGATTGATTCTCACATTTGTGTAGCTAagagagagagagag 1295
|||||||||| |||| |||||||| || |||||||||||||||| ||||||||||||
Sbjct 1271 GTGTTGAAATCAAAGGTATTGATT----CTGACATTTGTGTAGCTAAAAGAGAGAGAGAG 1326
Query 1296 CTTATTGCAGCAAGTTAGCTTCCACGACAAGAGGTGGAGG 1335
||||||| |||||||| ||||| |||||||||||||||||
Sbjct 1327 CTTATTGTAGCAAGTTTGCTTCAACGACAAGAGGTGGAGG 1366
> AT2G01400.1 | Symbols: | unknown protein; Has 19 Blast hits
to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:174271-175617 FORWARD LENGTH=1022
Length=1022
Score = 721 bits (390), Expect = 0.0
Identities = 523/582 (90%), Gaps = 29/582 (5%)
Strand=Plus/Minus
Query 776 GATCTGATTGCGGCGGACGGGATGACGAGGAGACGGAGGGACAGCACAGTCATGGTGGTG 835
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1021 GATCTGATTGCGGCGGACGGGATGACGAGGAGACGGAGAGACGGCACAGTCATGGTGGTG 962
Query 836 TCGCAGAAGAAGCTTTGGTTACTCAAGAGCCAAGACAGTTGGAGTGAAGGAGTGGTATAT 895
|| ||||||||||||||||||||||| |||||||| || ||||| |||||||| || ||
Sbjct 961 TCACAGAAGAAGCTTTGGTTACTCAAAAGCCAAGATAGCTGGAGCGAAGGAGTTGTTTAC 902
Query 896 GACGAAATTGACCTCGACCTCGAGGGCTTTCCGACGGCGGTGACGGTGGCGGAACGGGAT 955
|||||||||||||||||| |||||||||||||||| ||||||||||| |||| |||||||
Sbjct 901 GACGAAATTGACCTCGACATCGAGGGCTTTCCGACCGCGGTGACGGTTGCGGGACGGGAT 842
Query 956 AGGATATACGTGTTATACGGGAGAGTGATGGAGGGGATAATGGG-A--AGTTACAAAGAA 1012
|||||||| ||||| || |||||||||||||||||||||||||| | ||||||||||||
Sbjct 841 AGGATATATGTGTTGTATGGGAGAGTGATGGAGGGGATAATGGGAAGTAGTTACAAAGAA 782
Query 1013 GAAGGACCGAGGGAATGGTTTGGTATAGAAGAGGTTTGGTCGGAGAAGGAAGGTGGTGAA 1072
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GAAGGAGCGAGGGAATGGTTTGGTATAGAAGAGGTTTGGTCGGAGAAGGAAGGTGGTGAA 722
Query 1073 GATAAGATTTGGTTGTATGTGTTGATCGGATTTGGTTTCGCTTACTTCTGTTTCTGGAGG 1132
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 721 GATAAGATTTGGTTGTATGTGTTGATTGGATTTGGCTTCGCTTACTTCTGTTTCTGGAGA 662
Query 1133 TTTCAGATGAAGAAGCTCATCACAAACATGGACAAAAAGATCACTTAG-T-T-C---A-T 1185
||||||||||||||||||||||||||||||||||| |||||||||||| | | | | |
Sbjct 661 TTTCAGATGAAGAAGCTCATCACAAACATGGACAAGAAGATCACTTAGCTCTTCTCTACT 602
Query 1186 ---------CATC-T-T-ACACGTTTTGTAATAGGAAACCTAGCACAGAACAGCAGCATG 1233
|||| | | |||||||||||| |||||||||||||||||||||||| ||
Sbjct 601 TGTGTATTTCATCATCTTACACGTTTTGTAGTAGGAAACCTAGCACAGAACAGCA---TG 545
Query 1234 TAGTGTTGAAATGAAAGCTATTGATTGATTCTCACATTTGTGTAGCTAagagagagagag 1293
|||||||||||| |||| |||||||| || |||||||||||||||| ||||||||||
Sbjct 544 TAGTGTTGAAATCAAAGGTATTGATT----CTGACATTTGTGTAGCTAAAAGAGAGAGAG 489
Query 1294 agCTTATTGCAGCAAGTTAGCTTCCACGACAAGAGGTGGAGG 1335
||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 488 AGCTTATTGTAGCAAGTTTGCTTCAACGACAAGAGGTGGAGG 447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65712513405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5