BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484057
Length=2208
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01420.2 | Symbols: PIN4 | Auxin efflux carrier family prote... 3210 0.0
AT1G73590.1 | Symbols: PIN1, ATPIN1 | Auxin efflux carrier fami... 259 8e-68
> AT2G01420.2 | Symbols: PIN4 | Auxin efflux carrier family protein
| chr2:180105-183328 REVERSE LENGTH=2353
Length=2353
Score = 3210 bits (1738), Expect = 0.0
Identities = 2038/2179 (94%), Gaps = 36/2179 (2%)
Strand=Plus/Plus
Query 56 AAAAAATGATTACGTGGCACGACTTGTACACCGTCCTCACCGCCGTGGTGCCACTTTACG 115
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 125 AAAAAATGATTACGTGGCACGACTTGTACACCGTCCTCACCGCCGTGGTACCACTTTACG 184
Query 116 TCGCCATGATTCTTGCCTACGGATCCGTGCAGTGGTGGAAGATATTCTCCCCTGACCAGT 175
| || |||||||| |||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 185 TAGCTATGATTCTCGCCTACGGATCCGTACAGTGGTGGAAGATATTCTCACCAGACCAGT 244
Query 176 GCTCCGGCATCAATCGCTTCGTCGCCATTTTCGCCGTCCCTCTCCTCTCCTTCCACTTCA 235
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 245 GCTCCGGCATCAACCGCTTCGTCGCTATCTTCGCCGTCCCTCTCCTCTCCTTCCACTTCA 304
Query 236 TCTCCACCAACGATCCTTACGCCATGAACTTCCGCTTCGTCGCCGCCGACACGCTTCAAA 295
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 305 TCTCCACCAACGATCCTTACGCCATGAATTTCCGCTTCGTCGCCGCCGACACGCTTCAAA 364
Query 296 AGATCATCATGCTCGTCTTGCTTGGTCTATGGGCTAATCTAACCAAGAACGGTAGCTTGG 355
| ||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct 365 AAATCATCATGCTCGTCTTACTTGCTCTATGGGCTAACCTAACCAAGAACGGTAGCTTGG 424
Query 356 AGTGGATGATCACCATCTTCTCTCTCAGCACTCTCCCAAACACTCTTGTCATGGGAATCC 415
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 425 AGTGGATGATCACAATCTTCTCTCTCAGCACTCTCCCAAACACTCTTGTCATGGGGATCC 484
Query 416 CTTTGTTGATCGCCATGTACGGGACTTACGCTGGCTCTCTCATGGTTCAAGTCGTTGTTC 475
|| ||||||||||||||||||| || ||||| || ||||| ||||| |||||||||||||
Sbjct 485 CTCTGTTGATCGCCATGTACGGAACCTACGCAGGTTCTCTAATGGTCCAAGTCGTTGTTC 544
Query 476 TTCAGTGTATCATTTGGTACACTCTCCTTCTCTTTCTCTTCGAGTACCGTGGCGCTAAGC 535
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 545 TTCAGTGTATCATTTGGTACACTCTCCTTCTCTTCCTCTTCGAGTACCGTGGCGCTAAGC 604
Query 536 TT-TTGATTATGGAGCAGTTCCCGGAGACTGGTGCGTCCATTGTCTCCTTTAAAGTTGAA 594
|| || |||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 605 TTCTT-ATTATGGAGCAGTTCCCGGAGACTGGTGCGTCTATTGTTTCGTTTAAAGTTGAA 663
Query 595 TCCGACGTCGTTTCTCTCGACGGTCATGATTTTCTTGAGACGGATGCTGAGATCGGAAAC 654
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 664 TCCGACGTCGTTTCTCTCGACGGTCATGATTTTCTTGAGACGGATGCTGAGATAGGAAAC 723
Query 655 GACGGGAAGCTTCATGTTACGGTGAGGAAATCAAACGCTTCGAGACGGTCACTGATGATG 714
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 724 GACGGGAAGCTTCATGTTACCGTGAGGAAATCAAACGCATCGAGACGGTCACTGATGATG 783
Query 715 ACTCCTCGGCCTTCCAATCTCACCGGAGCTGAGATCTATAGTCTTAGTTCGACTCCGAGA 774
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 784 ACTCCACGGCCTTCGAATCTTACCGGAGCTGAGATCTATAGTCTTAGTTCGACTCCGAGA 843
Query 775 GGTTCTAATTTTAACCATTCTGATTTTTACTCGGTGATGGGATTTCCCGGCGGGAGGCTC 834
|||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 844 GGTTCTAACTTTAACCATTCTGATTTTTACTCTGTTATGGGGTTTCCCGGCGGGAGGCTT 903
Query 835 TCTAACTTTGGTCCGGCGGATCTATACTCCGTTCAATCTTCTCGTGGTCCGACTCCACGG 894
|| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 904 TCGAATTTTGGTCCGGCGGATTTGTACTCCGTTCAATCTTCTCGTGGTCCGACTCCACGG 963
Query 895 CCTTCTAATTTCGAAGAGAACAACGCCGTGAAATATGGATTTTACCCTAACACTAACACG 954
||||| || |||||||||||||||||||| ||||||||||||||| ||||||||||| |
Sbjct 964 CCTTCGAACTTCGAAGAGAACAACGCCGTTAAATATGGATTTTACAATAACACTAACA-G 1022
Query 955 ---AGTT-CTGC-TCCGG--CGTACCCGGCTCCGAACCCGGAGTTCTCCTCCGGTACGGC 1007
||| | || |||| ||||||||||||||||||||||||| || |||||||||
Sbjct 1023 TTCTGTTCCGGCGGCCGGTTCGTACCCGGCTCCGAACCCGGAGTTTTCAACCGGTACGGG 1082
Query 1008 TGTTACAACTAAACCGAATAAAATCCCAAAAGAAAACC-A-A-CAACAGCTTGATAAGGA 1064
|||| ||||||||||||||||||| || |||||||||| | | |||| || || || ||
Sbjct 1083 TGTTTCAACTAAACCGAATAAAATTCCTAAAGAAAACCAACAGCAACTGCAAGAGAAAGA 1142
Query 1065 TAACAAAGCGAGCCACGACGCTAAGGAGCTTCACATGTTTGTTTGGAGCTCAAGCGCTTC 1124
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 TAGCAAAGCGAGCCATGACGCTAAGGAGCTTCACATGTTTGTTTGGAGCTCAAGCGCTTC 1202
Query 1125 GCCGGTCTCCGACGTGTTTGGCGGAGGTGCAGGTGAAC-ACGTGGCAACGGAACAATCTG 1183
|||||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 1203 TCCGGTCTCCGACGTGTTTGGCGGAGGTGCAGGCG-ACAACGTGGCAACGGAACAATCTG 1261
Query 1184 AACAAGGTGCTAAGGAGATCCGGATGGTTGTTTCTGATCAACCTC------G-AA----A 1232
||||||||||||||||||| ||||||||||| ||||||||||||| | || |
Sbjct 1262 AACAAGGTGCTAAGGAGATTCGGATGGTTGTCTCTGATCAACCTCGAAAGAGTAATGCTA 1321
Query 1233 GA-GTGGTGGTGATGATATCGGCGGTGGTGATATTGGGGAGGGAGAAAGAGAGATAGAGA 1291
|| ||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||
Sbjct 1322 GAGGTGGTGGTGATGATATCGGCGGTCTTGATAGTGGAGAGGGAGAAAGAGAGATAGAGA 1381
Query 1292 AAGCTACAGCAGGGCTGAATAAAGTGGGGTCTAATTCCACGGCAGAGCTAGAGGCGGCTG 1351
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1382 AAGCTACAGCAGGGCTGAATAAAATGGGGTCTAATTCCACGGCGGAGCTAGAGGCGGCTG 1441
Query 1352 GTGGAGATGGCGGCGGAGGCGGCAACGGAACACATATGCCGCCGACAAGTGTGATGACGA 1411
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1442 GTGGAGATGGCGGC---GGCAACAACGGAACACATATGCCGCCGACAAGTGTGATGAC-A 1497
Query 1412 -GACTGATACTGATAATGGTGTGGCGAAAACTCATCAGAAACCCAAACACATACTCCAGT 1470
|||||||| |||||||||||||| |||| || ||||||||||||||||| |||||||||
Sbjct 1498 CGACTGATATTGATAATGGTGTGGAGAAAGCTGATCAGAAACCCAAACACGTACTCCAGT 1557
Query 1471 CTAATCGGTCTCATATGGGCTCTTGTTGCTTACCGGTGGCATGTGGCTATGCCAAAAATA 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1558 CTAATCGGTCTCATATGGGCTCTTGTTGCTTACCGGTGGCATGTGGCTATGCCCAAAATA 1617
Query 1531 CTACAACAATCCATCTCCATACTCTCAGATGCTGGTCTTGGAATGGCTATGTTCAGCTTA 1590
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TTACAACAATCCATCTCCATACTCTCAGATGCTGGTCTTGGAATGGCTATGTTCAGCTTA 1677
Query 1591 GGTCTATTCATGGCACTTCAACCCAAAATCATTGCTTGTGGGAACTCTGTCGCCACGTTT 1650
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 GGTTTATTCATGGCACTTCAACCCAAAATCATTGCTTGTGGGAACTCTGTCGCCACGTTT 1737
Query 1651 GCCATGGCCGTCAGATTTATAACCGGTCCGGCCATCATGGCTGTTGCTGGGATTGCCATT 1710
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 GCCATGGCGGTCAGATTTATAACCGGTCCGGCCATCATGGCTGTTGCTGGGATTGCCATT 1797
Query 1711 GGGTTACACGGGGACCTTCTCCGTATAGCCATCGTCCAGGCTGCGTTGCCTCAAGGAATA 1770
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1798 GGCTTACACGGCGACCTTCTCCGTATAGCCATCGTTCAGGCTGCGTTGCCTCAAGGAATA 1857
Query 1771 GTTCCGTTTGTGTTTGCAAAAGAGTACAATGTGCATCCCACGATTCTAAGCACTGGGGTC 1830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GTTCCGTTTGTGTTTGCAAAAGAGTACAATGTGCATCCCACGATTCTAAGCACTGGGGTC 1917
Query 1831 ATATTTGGAATGTTAATAGCTTTACCCATAACTCTGGTCTACTATATTCTTCTTGGCCTC 1890
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1918 ATATTTGGAATGTTAATAGCCTTACCTATAACTCTGGTCTACTATATTCTTCTTGGCCTT 1977
Query 1891 TGAATTGGTCCCTTCAGTTTCAACTGGCTTTTGAGAGCGCCTCGGAGATTGGGTTATTTA 1950
|||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1978 TGAATTGGTCCCTTCAGTATCAACTGGCTTTTGAGAGAGCCTCGGAGATTGGGCTATTTA 2037
Query 1951 TTTCTCGGTAACCAGGAAATAAACAAAGCTTTTTATTTT-CGTGGGAAAGAGTGGTAGGT 2009
|||||||||||| ||||||||| |||||| ||| ||||| ||||||||||||||| ||||
Sbjct 2038 TTTCTCGGTAACGAGGAAATAAGCAAAGCCTTT-ATTTTTCGTGGGAAAGAGTGGAAGGT 2096
Query 2010 GAAGAAGAAGATATGCCTTTGGTTTTTGCTTCCAATATTTGTGGAACACAACAAAAGTAC 2069
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2097 GAAGAAGAAGATATGCCTTTGGTTTTTGGTTCCAATATTTGTGGAACACAACAAAAGTAC 2156
Query 2070 TTAGGATTTAGTGAACAAGATTTGAATGGATTAAGGATCTTGTCTTCATTAGACGCCAAG 2129
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2157 TTAGGATTTAGTGAACAAGACTTGAATGGATTAAGGATCTTGTCTTCATTAGACGCCAAG 2216
Query 2130 AAGATAAAAGCACTCTTCCATCTATCtttattttttcattttctgtttttgttaatttat 2189
|||| |||| | ||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 2217 AAGAAAAAATCTCTCTTCC-T-TACCTTTATTTTTTCATTTTCTGTTTTTGTTAATTTAT 2274
Query 2190 gtgtagattttGGCTAAGC 2208
|||||||||||||||||||
Sbjct 2275 GTGTAGATTTTGGCTAAGC 2293
Score = 86.1 bits (46), Expect = 1e-15
Identities = 46/46 (100%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1 ATTACTGTACTTTTCTCTCTTAACGGTTTCTTTATTATTCTTCCCA 46
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 ATTACTGTACTTTTCTCTCTTAACGGTTTCTTTATTATTCTTCCCA 51
> AT1G73590.1 | Symbols: PIN1, ATPIN1 | Auxin efflux carrier family
protein | chr1:27659673-27663178 FORWARD LENGTH=2270
Length=2270
Score = 259 bits (140), Expect = 8e-68
Identities = 428/563 (76%), Gaps = 36/563 (6%)
Strand=Plus/Plus
Query 56 AAAAAATGATTAC-GTGGCACGACTTGTA-CACCGTCCTCACCGCCGTGGTGCCACTT-T 112
|||| |||||||| | ||| ||||| || || ||| | || || |||| || || |
Sbjct 95 AAAAGATGATTACGGCGGC-GGACTTCTACCA-CGTTATGACGGCTATGGTTCC-GTTAT 151
Query 113 ACGTCGCCATGATTCTTGCCTACGGATCCGTGC-AGTGGTGGAAGATATTCTCCCCTGAC 171
|||| || ||||| || || ||||| || || | | |||||||| || ||| | || |||
Sbjct 152 ACGTAGCTATGATCCTCGCTTACGGCTCTGT-CAAATGGTGGAAAATCTTCACACCAGAC 210
Query 172 CAGTGCTCCGGCATCAATCGCTTCGTCGC-CATTTTCGCCGTCCCTCTCCTCTCCTTCCA 230
|| ||||||||||| || || |||||||| | | |||||||| ||||||||||| |||||
Sbjct 211 CAATGCTCCGGCATAAACCGTTTCGTCGCTC-TCTTCGCCGTTCCTCTCCTCTCTTTCCA 269
Query 231 CTTCATCTCCACCAACGATCCTTACGCCATGAACTTCCGCTTCGTCGCCGCCGACACGCT 290
||||||| || | ||| | ||||||||||||||| |||| ||| ||||||| || | ||
Sbjct 270 CTTCATCGCCGCTAACAACCCTTACGCCATGAACCTCCGTTTCCTCGCCGCAGATTCTCT 329
Query 291 TCA-AAAGATCATCATGCTCGTCT-TGCTTGGT-CTATGG-GCTAATCT-AACCAAG-AA 344
|| |||| |||| | ||| ||| | | | | || ||| || || || | || | ||
Sbjct 330 CCAGAAAG-TCATTGTCCTC-TCTCT-CCTCTTCCTCTGGTGC-AAACTCAGCC--GCAA 383
Query 345 CGGTAGC-TTGGAGTGGATGATCAC-CATCTTCTCTCTCAGC-ACTCTCCCAAACACTCT 401
|||| | || || |||| || || | ||||||||||| | || ||||| ||||||||
Sbjct 384 CGGT-TCTTTAGATTGGACCATAACTC-TCTTCTCTCTC-TCGACACTCCCCAACACTCT 440
Query 402 TGTCATGGGAATCCCT-TTGTTGATCGCCATGTACGGGACTTACGCTGGC-TCTCTCATG 459
|||||||| || ||| || | | | |||||| || | || | | ||| | ||||||
Sbjct 441 AGTCATGGGGATACCTCTT-CTCAAAGGCATGTATGGTAATTTCTCCGGCGAC-CTCATG 498
Query 460 GTTCAAGTCGTTGTTCTTCAGTGTATCATTTGGTACACTCTCCTTCTCTTTCTCTTCGAG 519
|||||| ||||||||||||||||||||||||||||||| ||| | ||||||||||| |||
Sbjct 499 GTTCAAATCGTTGTTCTTCAGTGTATCATTTGGTACACACTCATGCTCTTTCTCTTTGAG 558
Query 520 TACCGTGGCGCTAAGCTTTTGAT-TATGGAGCAGTTCCCGGAGACTGGTGCG-TCCATTG 577
|||||||| |||||||||||||| | | ||||||| || || || | | | || ||||
Sbjct 559 TACCGTGGAGCTAAGCTTTTGATCTCCG-AGCAGTTTCCAGACACAGCAG-GATCTATTG 616
Query 578 TCTCCTTTAAAGTTGAATCCGAC 600
| || || | ||||| ||||||
Sbjct 617 TTTCGATTCATGTTGATTCCGAC 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109537589190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5