BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484067
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01490.1 | Symbols: | phytanoyl-CoA dioxygenase (PhyH) fami... 1720 0.0
> AT2G01490.1 | Symbols: | phytanoyl-CoA dioxygenase (PhyH) family
protein | chr2:221246-223418 FORWARD LENGTH=1153
Length=1153
Score = 1720 bits (931), Expect = 0.0
Identities = 1072/1136 (94%), Gaps = 26/1136 (2%)
Strand=Plus/Plus
Query 1 ATCAATTTCCCGGCGAAATCTCTACCGGAACCACCGCGTTATGGGAATCACCGGAAGTCT 60
|||||||||||||||||| ||| || |||| | |||||||||||||||||||||||
Sbjct 39 ATCAATTTCCCGGCGAAA--TCT-CC---ACCA--GAGTTATGGGAATCACCGGAAGTCT 90
Query 61 AACTCCAGATCAGCTCCAGTTTTTT-CACTCTCAAGGGTATTTGGTAATCGAATCGTTCG 119
||| |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||
Sbjct 91 AACGCCAGATCAGCTCGA-TTTTTTCCACTCTCAAGGGTATTTGGTAATCGAATCGTTCG 149
Query 120 CGAATGAGGATGAGATTAGAGGCTTAAGGAAGAGGATGGACGAGTTGCTTAATCAGTTTG 179
||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 150 CGAGTGAGGATGAGATAAGAGGCTTAAGGAAGAGGATGGATGAGTTGCTTAATCAGTTTG 209
Query 180 ATTGTTCCGTCTCGTCCTCTATCTTCTCCACTAAGAATCAGAAGCACACCACCGATAATT 239
||||||||| || ||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 210 ATTGTTCCG--TC-TCCTCTATCTTCTCCACCAAAAATCAGAAGCACACCACAGATAATT 266
Query 240 ACTTCTTTGAGAGCGCTCAGAAAATCTCCTTCTTCTTTGAAGAAAAAGCTTTTGCTGATG 299
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 267 ACTTCTTTGAGAGCGCTGAGAAAATCTCCTTCTTCTTTGAAGAAAAAGCTTTTGGTGATG 326
Query 300 ATGGGAAATTGAAGCAACCCAAAGAACTCTCTATAAACAAAGTTGGGCATGCACTGCATG 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 327 ATGGGAAATTGAAGCAACCCAAACAACTCTCTATAAACAAAGTTGGGCATGCACTGCATG 386
Query 360 AGCTTGACCCATTGTATAAGGAATTCACATATTCGTCCAAGTTTTCAAGTTTGGTGTCAT 419
|||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||
Sbjct 387 AGCTTGACCCATTGTATAAGGATTTCACATATTCGTCAAAGTTTTCAAGTTTGGCATCAT 446
Query 420 CCTTAGGTTACAAGAGACCAGTAGTCATGCAGTCTATGTACATTTTCAAGCAACCTGGAA 479
|||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 447 CCTTAGGTTACAGGAGACCAGTTGTCATGCAGTCTATGTATATTTTCAAGCAACCTGGAA 506
Query 480 TTGGAGGCGAAGTTGTGCCGCACCAAGATAATTCTTTTGTGTACACGGATCCACAGAGTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 TTGGAGGCGAAGTTGTGCCGCACCAAGATAATTCTTTTGTGTACACGGATCCACAGAGTT 566
Query 540 GTACTGGTCTCTGGATTGCTCTGGAAGATTCTACAACAGTTAATGGTTGTCTTTGGGCAA 599
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 567 GTACTGGTCTCTGGATTGCTCTTGAAGATTCTACATTAGTTAATGGTTGTCTTTGGGCAA 626
Query 600 TTCCTGGATCTCATAAGAATGGTTTAGTTAGAAGGTTTATCCGGGGGGAAAACGGTGTAA 659
||||||||||||||||||||||||||||||||||||||||||| || || |||||| |||
Sbjct 627 TTCCTGGATCTCATAAGAATGGTTTAGTTAGAAGGTTTATCCGTGGTGACAACGGTATAA 686
Query 660 CCTTTGATCAGCCATCCCCATCCTACGAGCAGAAAGATTTCGTGTCTATTGAAATGAAAG 719
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 687 CCTTTGATCAGCCATCCCCATCTTACGAGCAGAAAGATTTTGTGTCTATTGAAATGAAAG 746
Query 720 CAGGCTCATTGATTGCCATTCATGGTGATCTAATCCATCAAAGTTTCGAGAATCTATCCT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 CAGGCTCATTGATTGCCATTCATGGTGATCTAATCCATCAAAGTTTCGAGAATCTATCCT 806
Query 780 TGAAGTCAAGACATGCCTATAGCTTACATGTAGTAGAATCTGATGGATGTAAGTGGGCAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 807 CGAAGTCAAGACATGCCTATAGCTTACATGTAGTAGAATCTGATGGATGTAAATGGGCAA 866
Query 840 AAGACAACTGGATACAAAGAGAAAAAATGCCGGAGCCTCTCTATGTTCTTCCTTGATTCA 899
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 867 AAGACAACTGGATACAAAGAGCAAAAATGCCGGAGCCTCTCTATGTTCTTCCTTGATTCA 926
Query 900 CA-CCAGTCGTGGGAAAACACTGTGAGTTACTGTTTATCAAATTTCTTTTATGATGATCT 958
| |||||||||| ||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 927 -AGCCAGTCGTGGAAAAACACTGTGAGTTACTGTTTATCAAATTTCTTTTA--A-GATC- 981
Query 959 ACCCACTATCTTTGTGAGAACTTTGAACAGTAATAAGAACATGGCTAAAAGGGCCTTCTT 1018
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 982 AC----TATCTTTGTGAGAACTATGAACAGTAATAAGAACATGGCTAAAAGGGCCTTCTT 1037
Query 1019 GTGTCATTTACTTGTTGAA-TACAATTTGTTTATGCTTGGTCTCTGTAGTT--GTCTTTA 1075
||||| ||||||||||||| |||||||||||| | |||||||||||||||| |||||||
Sbjct 1038 GTGTCGTTTACTTGTTGAAATACAATTTGTTTCTTCTTGGTCTCTGTAGTTCTGTCTTTA 1097
Query 1076 GATAACCAAACTCAGTGGTCAATAAAGTGTGACAGTGATTACTTGATGTTTCTTTG 1131
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 AATAACCAAACTCTGTGGTCAATAAAGTGTGACAGTGATTACTTGATGTTTCTTTG 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5