BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484068
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | Homeodomain-like supe... 1705 0.0
AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 | chr3... 76.8 5e-13
> AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | Homeodomain-like superfamily
protein | chr2:224156-226192 REVERSE LENGTH=1325
Length=1325
Score = 1705 bits (923), Expect = 0.0
Identities = 1219/1351 (90%), Gaps = 63/1351 (5%)
Strand=Plus/Plus
Query 1 AGCCTTTTCATCTCTCTTGCATCACAAGTAAACCTCTCATCATTCATTCCCACACAGCAC 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AGCCTTTTCATCTCTCTTGCATCACAAGTAAACCTCTCATCATTCATTTCCACACAGCAC 60
Query 61 TGAAACTCAAGCATTTTCTCTCTCAAATCCCATTTCCCTAGCTAAAAGGTTCAAAATTCC 120
|||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||| |
Sbjct 61 TGAAACTCGAGCATTTGCTCTCTCGAATCCCATTTCCCTAGCTAAAAGGTTCGGAATT-C 119
Query 121 ACAATAACAACAACAACAAAAGACCTATTTTGTGAATCTTTTCTCTAAATTAAAAGTGAT 180
| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 120 -C----ACAACAACAACAAAAGACCTATTTTGTGAATCTTTTCTCTAAATTAAGAGTTAT 174
Query 181 TAGGGCAAACTTCTACATAGCATGGGCTACATCTCCAACAACAACCTCATCAACTATTTG 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TAGGGCAAATTTCTACATAGCATGGGCTACATCTCCAACAACAACCTCATCAACTATTTG 234
Query 241 CCCCTCTCTACTACTCAACCTCCTCTTCTTCTCCCACACTACTGTGATATTAACGGCAAT 300
||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||
Sbjct 235 CCCCTCTCTACTACTCAACCTCCTCTTCTTCTCAC-C-C-ACTGTGATATTAACGGCAAT 291
Query 301 GATCACCATCAGCTCATCACTGCATCATCAGGAGAACTCGAT---GATGATCGGAAAAAT 357
||||||||||||||||| || |||||||||||||||| |||| ||||| ||||||||
Sbjct 292 GATCACCATCAGCTCATAACCGCATCATCAGGAGAACACGATATTGATGAACGGAAAAAC 351
Query 358 AACATTCCTGCGACGGCGACTTCAAGATGGAATCCGACACCCGAGCAGATCACGATGCTA 417
|||||||||||| ||||||||| |||||||||||||| || ||||||||||||| ||||
Sbjct 352 AACATTCCTGCGGCGGCGACTTTGAGATGGAATCCGACGCCAGAGCAGATCACGACGCTA 411
Query 418 GAAGAGCTTTACATGA-GCGGAACACGGACACCGACGACGGAACATATCCAACAGATAGC 476
||||||||||||| || ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 412 GAAGAGCTTTACA-GAAGCGGAACACGGACGCCGACGACGGAACAGATCCAACAGATAGC 470
Query 477 ATCTAAGCTTCGTAAATATGGGAGAATCGAAGGGAAGAACGTTTTCTATTGGTTTCAGAA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 ATCTAAGCTTCGTAAATATGGGAGAATCGAAGGGAAGAACGTTTTCTATTGGTTTCAGAA 530
Query 537 TCATAAGGCTAGGGAGAGACTAAAACGACGCCGTTGTGAAGGAGGTGCTCTTAACAAACC 596
|||||||||||| |||||||||||||| |||||| ||||||| |||||| ||| ||||||
Sbjct 531 TCATAAGGCTAGAGAGAGACTAAAACGCCGCCGTCGTGAAGGTGGTGCTATTATCAAACC 590
Query 597 ACATAAAGATGTCAAGGATTCATCATCAGGTGGTTATCGAGTTGATCAGACAAAGAGCTG 656
||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 591 ACATAAAGACGTCAAGGATTCATCATCAGGTGGTCATCGAGTTGATCAGACAAAGCTCTG 650
Query 657 CCCATCTCTTCCACACACAAACC--C-ACAGCCACAGCATGAATTAGATCCTGCGAGTAA 713
||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |
Sbjct 651 CCCATCTTTTCCACACACAAACCGACCACAGCCACAGCATGAATTAGATCCTGCGAGTTA 710
Query 714 CAATAAAGACAACAATGCTAAGAATGAAGATCATGGGAC-AGCTGAAGAATCTG-T--GA 769
||||||||||||||||||||| ||||||||||||||||| | |||||||||||| | ||
Sbjct 711 CAATAAAGACAACAATGCTAATAATGAAGATCATGGGACGA-CTGAAGAATCTGATCAGA 769
Query 770 GGGCATCAGAGGATGGTAAAGACGCCACGTGGAGAAATCTTGTTACTTGGTCGATAACTC 829
|||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 770 GGGCATCAGAGGTTGGTAAATACGCCACATGGAGAAATCTTGTTACTTGGTCGATAACTC 829
Query 830 AAGAACCTGCAGGAGAGATTAATATTGACCAAAATGTCAACGGAGAAGGACAAGAAGAAA 889
|| |||| | | |||||||||||| ||| |||||||||||||||||| | | |||||||
Sbjct 830 AACAACCGG-A--AGAGATTAATATCGACGAAAATGTCAACGGAGAAG-A-A-GAAGAAA 883
Query 890 CGAGGGAGATTCGAACTTTAGATCTCTTTCCGGTTAGGGAGAACCACGAGGAAACAGGCC 949
||||||| | || |||||| |||||||||||||||||||| |||| ||| |||||||||
Sbjct 884 CGAGGGACAACCGGACTTTAAATCTCTTTCCGGTTAGGGAGTACCAAGAGAAAACAGGCC 943
Query 950 GGTTTACAGAGAAGACGAAAGCAAATCAAGTGTTTTGCAACTACTGCTACTACTACGAGT 1009
|||| | |||||||||||||||| | | ||||||||| |||||||||||||
Sbjct 944 GGTTGATAGAGAAGACGAAAGCA--T---G-------CAACTACTGTTACTACTACGAGT 991
Query 1010 TCATGCCTCTGAAGAACTGAAACAAAAA-CCCATGTGTGAGTAATAAATAGGACAAAGGG 1068
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 992 TCATGCCTCTGAAGAACTGAAACAAAAAACCCATGTGTGAATAATAAATAGGAC------ 1045
Query 1069 ATTTAATGAAGGTTTTACTTGTTCTTTTGTCCA-GAAATGGTAAGTGATGTGTTCTTACT 1127
|||||||||||||||| ||||| ||||||||| ||| |||||||||||||||||||| |
Sbjct 1046 -TTTAATGAAGGTTTTATTTGTTGTTTTGTCCACGAA-TGGTAAGTGATGTGTTCTTA-T 1102
Query 1128 TCTTAGGTAGAAGAGATGAGTTTGAAGATGGAGACGTGTAGTAAATGTTA----GGAGCG 1183
| ||||||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 1103 A---A--TAGAAGAGAAGCGTTTGAAGATGGAGACGTGTAGTAAATGTTATATAGGAGCG 1157
Query 1184 TTTGAATTTT-TTATATAATAGTTATTACCCAAATGTGAAGGTGGACCATGTTGGGGCTT 1242
|||||| || |||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1158 TTTGAAGATTATTAT-TGTTAGTTATTACCCAAATGAGAAGGTGGACCATGTTGGGGCTT 1216
Query 1243 GGGTTTGGAGCTGCAACCATCTAATACATGTGTCTGAAAGTTAAACTGAAAGCTTCGATG 1302
|||||||||| |||||| ||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 1217 GGGTTTGGAGTTGCAACTATCTA-TACATATGTCTGAAAGTGAAACTGAAAGCTTCGATG 1275
Query 1303 GTTCCTTGTCAATGTAAGGAATATATATTAA 1333
|||||||||||||||||||||||||||||||
Sbjct 1276 GTTCCTTGTCAATGTAAGGAATATATATTAA 1306
> AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 | chr3:3527575-3528433
FORWARD LENGTH=750
Length=750
Score = 76.8 bits (41), Expect = 5e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 511 AAGAACGTTTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAG 554
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 230 AAGAATGTTTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAG 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65612112315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5