BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484068 Length=1333 Score E Sequences producing significant alignments: (Bits) Value AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | Homeodomain-like supe... 1705 0.0 AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 | chr3... 76.8 5e-13 > AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | Homeodomain-like superfamily protein | chr2:224156-226192 REVERSE LENGTH=1325 Length=1325 Score = 1705 bits (923), Expect = 0.0 Identities = 1219/1351 (90%), Gaps = 63/1351 (5%) Strand=Plus/Plus Query 1 AGCCTTTTCATCTCTCTTGCATCACAAGTAAACCTCTCATCATTCATTCCCACACAGCAC 60 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 AGCCTTTTCATCTCTCTTGCATCACAAGTAAACCTCTCATCATTCATTTCCACACAGCAC 60 Query 61 TGAAACTCAAGCATTTTCTCTCTCAAATCCCATTTCCCTAGCTAAAAGGTTCAAAATTCC 120 |||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||| | Sbjct 61 TGAAACTCGAGCATTTGCTCTCTCGAATCCCATTTCCCTAGCTAAAAGGTTCGGAATT-C 119 Query 121 ACAATAACAACAACAACAAAAGACCTATTTTGTGAATCTTTTCTCTAAATTAAAAGTGAT 180 | ||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 120 -C----ACAACAACAACAAAAGACCTATTTTGTGAATCTTTTCTCTAAATTAAGAGTTAT 174 Query 181 TAGGGCAAACTTCTACATAGCATGGGCTACATCTCCAACAACAACCTCATCAACTATTTG 240 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 175 TAGGGCAAATTTCTACATAGCATGGGCTACATCTCCAACAACAACCTCATCAACTATTTG 234 Query 241 CCCCTCTCTACTACTCAACCTCCTCTTCTTCTCCCACACTACTGTGATATTAACGGCAAT 300 ||||||||||||||||||||||||||||||||| | | | |||||||||||||||||||| Sbjct 235 CCCCTCTCTACTACTCAACCTCCTCTTCTTCTCAC-C-C-ACTGTGATATTAACGGCAAT 291 Query 301 GATCACCATCAGCTCATCACTGCATCATCAGGAGAACTCGAT---GATGATCGGAAAAAT 357 ||||||||||||||||| || |||||||||||||||| |||| ||||| |||||||| Sbjct 292 GATCACCATCAGCTCATAACCGCATCATCAGGAGAACACGATATTGATGAACGGAAAAAC 351 Query 358 AACATTCCTGCGACGGCGACTTCAAGATGGAATCCGACACCCGAGCAGATCACGATGCTA 417 |||||||||||| ||||||||| |||||||||||||| || ||||||||||||| |||| Sbjct 352 AACATTCCTGCGGCGGCGACTTTGAGATGGAATCCGACGCCAGAGCAGATCACGACGCTA 411 Query 418 GAAGAGCTTTACATGA-GCGGAACACGGACACCGACGACGGAACATATCCAACAGATAGC 476 ||||||||||||| || ||||||||||||| |||||||||||||| |||||||||||||| Sbjct 412 GAAGAGCTTTACA-GAAGCGGAACACGGACGCCGACGACGGAACAGATCCAACAGATAGC 470 Query 477 ATCTAAGCTTCGTAAATATGGGAGAATCGAAGGGAAGAACGTTTTCTATTGGTTTCAGAA 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 ATCTAAGCTTCGTAAATATGGGAGAATCGAAGGGAAGAACGTTTTCTATTGGTTTCAGAA 530 Query 537 TCATAAGGCTAGGGAGAGACTAAAACGACGCCGTTGTGAAGGAGGTGCTCTTAACAAACC 596 |||||||||||| |||||||||||||| |||||| ||||||| |||||| ||| |||||| Sbjct 531 TCATAAGGCTAGAGAGAGACTAAAACGCCGCCGTCGTGAAGGTGGTGCTATTATCAAACC 590 Query 597 ACATAAAGATGTCAAGGATTCATCATCAGGTGGTTATCGAGTTGATCAGACAAAGAGCTG 656 ||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 591 ACATAAAGACGTCAAGGATTCATCATCAGGTGGTCATCGAGTTGATCAGACAAAGCTCTG 650 Query 657 CCCATCTCTTCCACACACAAACC--C-ACAGCCACAGCATGAATTAGATCCTGCGAGTAA 713 ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 651 CCCATCTTTTCCACACACAAACCGACCACAGCCACAGCATGAATTAGATCCTGCGAGTTA 710 Query 714 CAATAAAGACAACAATGCTAAGAATGAAGATCATGGGAC-AGCTGAAGAATCTG-T--GA 769 ||||||||||||||||||||| ||||||||||||||||| | |||||||||||| | || Sbjct 711 CAATAAAGACAACAATGCTAATAATGAAGATCATGGGACGA-CTGAAGAATCTGATCAGA 769 Query 770 GGGCATCAGAGGATGGTAAAGACGCCACGTGGAGAAATCTTGTTACTTGGTCGATAACTC 829 |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 770 GGGCATCAGAGGTTGGTAAATACGCCACATGGAGAAATCTTGTTACTTGGTCGATAACTC 829 Query 830 AAGAACCTGCAGGAGAGATTAATATTGACCAAAATGTCAACGGAGAAGGACAAGAAGAAA 889 || |||| | | |||||||||||| ||| |||||||||||||||||| | | ||||||| Sbjct 830 AACAACCGG-A--AGAGATTAATATCGACGAAAATGTCAACGGAGAAG-A-A-GAAGAAA 883 Query 890 CGAGGGAGATTCGAACTTTAGATCTCTTTCCGGTTAGGGAGAACCACGAGGAAACAGGCC 949 ||||||| | || |||||| |||||||||||||||||||| |||| ||| ||||||||| Sbjct 884 CGAGGGACAACCGGACTTTAAATCTCTTTCCGGTTAGGGAGTACCAAGAGAAAACAGGCC 943 Query 950 GGTTTACAGAGAAGACGAAAGCAAATCAAGTGTTTTGCAACTACTGCTACTACTACGAGT 1009 |||| | |||||||||||||||| | | ||||||||| ||||||||||||| Sbjct 944 GGTTGATAGAGAAGACGAAAGCA--T---G-------CAACTACTGTTACTACTACGAGT 991 Query 1010 TCATGCCTCTGAAGAACTGAAACAAAAA-CCCATGTGTGAGTAATAAATAGGACAAAGGG 1068 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 992 TCATGCCTCTGAAGAACTGAAACAAAAAACCCATGTGTGAATAATAAATAGGAC------ 1045 Query 1069 ATTTAATGAAGGTTTTACTTGTTCTTTTGTCCA-GAAATGGTAAGTGATGTGTTCTTACT 1127 |||||||||||||||| ||||| ||||||||| ||| |||||||||||||||||||| | Sbjct 1046 -TTTAATGAAGGTTTTATTTGTTGTTTTGTCCACGAA-TGGTAAGTGATGTGTTCTTA-T 1102 Query 1128 TCTTAGGTAGAAGAGATGAGTTTGAAGATGGAGACGTGTAGTAAATGTTA----GGAGCG 1183 | ||||||||| | ||||||||||||||||||||||||||||||| |||||| Sbjct 1103 A---A--TAGAAGAGAAGCGTTTGAAGATGGAGACGTGTAGTAAATGTTATATAGGAGCG 1157 Query 1184 TTTGAATTTT-TTATATAATAGTTATTACCCAAATGTGAAGGTGGACCATGTTGGGGCTT 1242 |||||| || |||| | ||||||||||||||||| ||||||||||||||||||||||| Sbjct 1158 TTTGAAGATTATTAT-TGTTAGTTATTACCCAAATGAGAAGGTGGACCATGTTGGGGCTT 1216 Query 1243 GGGTTTGGAGCTGCAACCATCTAATACATGTGTCTGAAAGTTAAACTGAAAGCTTCGATG 1302 |||||||||| |||||| ||||| ||||| ||||||||||| |||||||||||||||||| Sbjct 1217 GGGTTTGGAGTTGCAACTATCTA-TACATATGTCTGAAAGTGAAACTGAAAGCTTCGATG 1275 Query 1303 GTTCCTTGTCAATGTAAGGAATATATATTAA 1333 ||||||||||||||||||||||||||||||| Sbjct 1276 GTTCCTTGTCAATGTAAGGAATATATATTAA 1306 > AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 | chr3:3527575-3528433 FORWARD LENGTH=750 Length=750 Score = 76.8 bits (41), Expect = 5e-13 Identities = 43/44 (98%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 511 AAGAACGTTTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAG 554 ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 230 AAGAATGTTTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAG 273 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65612112315 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5