BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484073
Length=2133
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01570.1 | Symbols: RGA1, RGA | GRAS family transcription fa... 2569 0.0
AT1G14920.1 | Symbols: GAI, RGA2 | GRAS family transcription fa... 1122 0.0
> AT2G01570.1 | Symbols: RGA1, RGA | GRAS family transcription
factor family protein | chr2:255249-257550 REVERSE LENGTH=2302
Length=2302
Score = 2569 bits (1391), Expect = 0.0
Identities = 1664/1789 (93%), Gaps = 45/1789 (3%)
Strand=Plus/Plus
Query 145 AAATGAAGAGAGATCTTCATCAATTTCAAGGTCGATTGTCCAACCACGGGACTTCTTC-T 203
||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 205 AAATGAAGAGAGATCATCACCAATTCCAAGGTCGATTGTCCAACCACGGGACTTCTTCTT 264
Query 204 --TCATCATC-A--TCTAAAGATAAGATGATGATGGTGAAAAAAGAAGAAGACGGT---G 255
|||||||| | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 265 CATCATCATCAATCTCTAAAGATAAGATGATGATGGTGAAAAAAGAAGAAGACGGTGGAG 324
Query 256 GTAACATGGATGATGAGCTTCTCGCTGTTTTAGGTTACAAAGTTAGGTCATCGGAGATGG 315
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 GTAACATGGACGACGAGCTTCTCGCTGTTTTAGGTTACAAAGTTAGGTCATCGGAGATGG 384
Query 316 CGGAGGTTGCTTTGAAACTCGAGCAATTAGAGACGATGATGGGTAATGTTCAAGAAGATG 375
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 385 CGGAGGTTGCTTTGAAACTCGAACAATTAGAGACGATGATGAGTAATGTTCAAGAAGATG 444
Query 376 GTTTATCTCATCTCGCCACGGACACTGTTCATTATAATCCATCGGAGCTTTATTCTTGGC 435
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 445 GTTTATCTCATCTCGCGACGGATACTGTTCATTATAATCCGTCGGAGCTTTATTCTTGGC 504
Query 436 TTGATAATATGCTCTCTGAGCTTAA---TCCT-C-C-TCCGGCTG-GTTCCAACGGTTTA 488
||||||||||||||||||||||||| |||| | | |||||| | |||| |||||||||
Sbjct 505 TTGATAATATGCTCTCTGAGCTTAATCCTCCTCCTCTTCCGGC-GAGTTCTAACGGTTTA 563
Query 489 GATCCGATTCTTCCTTCGCCGGAGATTGGTGGTTTTCCGGCTTCGGATTATGACCTCAAA 548
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 564 GATCCGGTTCTTCCTTCGCCGGAGATTTGTGGTTTTCCGGCTTCGGATTATGACCTTAAA 623
Query 549 GTCATTCCTGGTAACGCGATTTATCATCAGAATCAATTTCCGGCGATTGATTCTTCGTCT 608
|||||||| || ||||||| || | ||||| ||||||||||||||||||||||||
Sbjct 624 GTCATTCCCGGAAACGCGA-TT-T-ATCAG------TTTCCGGCGATTGATTCTTCGTCT 674
Query 609 TCGTCGAATAATCAGAGCAAGCGTTTGAAATCATGCTCGAGTCCTGATTCAATGGTTACA 668
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 675 TCGTCGAATAATCAGAACAAGCGTTTGAAATCATGCTCGAGTCCTGATTCTATGGTTACA 734
Query 669 TCCACCTCGACGGCG-ACACAGATTGGTGGAGTCATCGGCACGACGGT----------A- 716
|| || ||||||| | || ||||||||||||||||| || |||||||| |
Sbjct 735 TCGACTTCGACGG-GTACGCAGATTGGTGGAGTCATAGGAACGACGGTGACGACAACCAC 793
Query 717 -ACTACAACGACGGCGGC---TGAGTCAACTCGTGCTGTTATCCTGGTTGACTCACAAGA 772
|| |||||||||||||| ||||||||||||| ||||||||||||||||||| |||||
Sbjct 794 CACGACAACGACGGCGGCGGGTGAGTCAACTCGTTCTGTTATCCTGGTTGACTCGCAAGA 853
Query 773 GAACGGTGTTCGTTTAGTTCACGCGCTTATGGCTTGTGCTGAAGCAATCCAGCAGAACAA 832
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 854 GAACGGTGTTCGTTTAGTCCACGCGCTTATGGCTTGTGCAGAAGCAATCCAGCAGAACAA 913
Query 833 TTTGACTCTAGCGGAAGCTCTTGTGAAGCAAATCGGATGCTTAGCTGTGTCACAAGCCGG 892
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 914 TTTGACTCTAGCGGAAGCTCTTGTGAAGCAAATCGGATGCTTAGCTGTGTCTCAAGCCGG 973
Query 893 AGCTATGAGAAAAGTCGCTACTTATTTCGCCGAAGCTCTT-GCACGGCGGATCTACCGCC 951
||||||||||||||| |||||||| |||||||||||| || || |||||||||||||| |
Sbjct 974 AGCTATGAGAAAAGTGGCTACTTACTTCGCCGAAGCT-TTAGCGCGGCGGATCTACCGTC 1032
Query 952 TCTCTCCGCCGCAGAATCAAATCGACCATTCTCTCTCCGATACTCTTCAGATGCACTTTT 1011
||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct 1033 TCTCTCCGCCGCAGAATCAGATCGATCATTGTCTCTCCGATACTCTTCAGATGCACTTTT 1092
Query 1012 ATGAGACTTGTCCTTATCTTAAATTCGCTCACTTTACGGCGAATCAAGCGATTCTTGAAG 1071
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 1093 ACGAGACTTGTCCTTATCTTAAATTCGCTCACTTCACGGCGAACCAAGCGATTCTCGAAG 1152
Query 1072 CTTTTGAAGGTAAGAAGAGAGTTCATGTCATTGATTTTTCTATGAACCAAGGTCTTCAAT 1131
|||||||||||||||||||||| || ||||||||||| || |||||||||||||||||||
Sbjct 1153 CTTTTGAAGGTAAGAAGAGAGTACACGTCATTGATTTCTCGATGAACCAAGGTCTTCAAT 1212
Query 1132 GGCCTGCGCTTATGCAAGCTCTTGCGCTTCGAGAAGGAGGTCCTCCAACTTTCCGGTTAA 1191
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 GGCCTGCACTTATGCAAGCTCTTGCGCTTCGAGAAGGAGGTCCTCCAACTTTCCGGTTAA 1272
Query 1192 CCGGAATTGGTCCGCCGGCGCCGGATAATTCTGATCATCTTCACGACGTTGGCTGTAAAT 1251
||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 1273 CCGGAATTGGTCCACCGGCGCCGGATAATTCTGATCATCTTCATGAAGTTGGTTGTAAAT 1332
Query 1252 TAGCTCAGCTTGCGGAGGTGATTCACGTTGAATTCGAATACCGTGGATTCGTCGCTAACA 1311
|||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1333 TAGCTCAGCTTGCGGAGGCGATTCACGTAGAATTCGAATACCGTGGATTCGTTGCTAACA 1392
Query 1312 GCTTAGCCGATCTTGATGCGTCGATGCTTGAACTTAGACCGAGTGAGACGGAAGCTGTTG 1371
||||||||||||| ||||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct 1393 GCTTAGCCGATCTCGATGCTTCGATGCTTGAGCTTAGACCGAGCGATACGGAAGCTGTTG 1452
Query 1372 CGGTGAACTCTGTTTTCGAGCTCCATAAACTCTTAGGTCGTCCCGGTGGGATAGAGAAAG 1431
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1453 CGGTGAACTCTGTTTTTGAGCTACATAAGCTCTTAGGTCGTCCCGGTGGGATAGAGAAAG 1512
Query 1432 TTCTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCACGGTGGTTGAGCAAGAATCGA 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 TTCTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCACGGTGGTTGAGCAAGAATCGA 1572
Query 1492 ACCATAACGGACCGGTTTTCTTAGACCGGTTTACTGAATCGTTACATTACTATTCGACTC 1551
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1573 ACCATAACGGACCGGTTTTCTTAGACCGGTTTACTGAATCGTTACATTATTATTCGACTC 1632
Query 1552 TGTTTGATTCGTTGGAAGGAGTTCCGAGTAGCCAAGACAAAGTCATGTCCGAAGTTTACT 1611
||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 1633 TGTTTGATTCGTTGGAAGGAGTTCCGAATAGTCAAGACAAAGTCATGTCTGAAGTTTACT 1692
Query 1612 TAGGGAAACAGATTTGCAATCTTGTGGCTTGTGAAGGTCCTGACCGGGTCGAGAGGCATG 1671
|||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| || |
Sbjct 1693 TAGGGAAACAGATTTGTAATCTGGTGGCTTGTGAAGGTCCTGACAGAGTCGAGAGACACG 1752
Query 1672 AAACGCTGAGTCAATGGGGAAACCGGTTTGGTTCGTCCGGTTTTGCGCCGGCAAATCTCG 1731
||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 1753 AAACGTTGAGTCAATGGGGAAACCGGTTTGGTTCGTCCGGTTTAGCGCCGGCACATCTTG 1812
Query 1732 GGTCTAACGCGTTTAAGCAAGCGAGTATGCTTTTGTCAGTGTATAATAGTGGCCAAGGTT 1791
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1813 GGTCTAACGCGTTTAAGCAAGCGAGTATGCTTTTGTCTGTGTTTAATAGTGGCCAAGGTT 1872
Query 1792 ATCGTGTGGAGGAGAATAATGGATGTTTGATGTTGGGTTGGCACACTCGCCCGCTCATTA 1851
||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1873 ATCGTGTGGAGGAGAGTAATGGATGTTTGATGTTGGGTTGGCACACTCGTCCACTCATTA 1932
Query 1852 CCACCTCCGCTTGGAAACTCTCGACGGCGGCGCACTGAGTTTGACTCGA 1900
|||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1933 CCACCTCCGCTTGGAAACTCTCGACGGCGGCGTACTGAGTTTGACTCGA 1981
Score = 287 bits (155), Expect = 3e-76
Identities = 209/233 (90%), Gaps = 11/233 (5%)
Strand=Plus/Plus
Query 1897 TCGAGTGAATTTGAGATTGAAATCAGTGGACCGGTGATGACATATGTTCGGACCCAGACC 1956
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 2007 TCGAGTGAATTTGAGATTGAGATCAGTGGACCGGTGATGACATATGTTCGGACCAAGACC 2066
Query 1957 AAAACCGAACTGAATCGAACCGGTTTGCCTTTTGTTTATTTTATTTATTTTCA--C-CT- 2012
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 2067 TAAACCGAACTGAATCGAACCGTTTTGCCTTTTGTTTATTTTATTTATTTTCGTTCACTT 2126
Query 2013 GTTTAAAATTCTTATATTTGAAATATCGTTTTCGTAGGTCATTTTTAAATTTATGCCTTT 2072
||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||||
Sbjct 2127 GTTTAAAATTCTTATAT---A--TATCGTTTTGGTAGGTCATTTTTAA-TTTATGCCTTT 2180
Query 2073 TTTGGGATCAATTTAAAATAGGCTGAGAATGTATTTATTAAAAAACTATGTTT 2125
|| ||||||||||| ||||||||||| |||||||||||| ||| ||| |||
Sbjct 2181 TT-GGGATCAATTTTTAATAGGCTGAGTTTGTATTTATTAATAAATTATCTTT 2232
Score = 119 bits (64), Expect = 1e-25
Identities = 108/126 (86%), Gaps = 16/126 (13%)
Strand=Plus/Plus
Query 1 TGAATGATGATTGAAGTGGTAGTAGCAGTGAAAAAC-AAAGCAAT-C---CCC--ACCCA 53
|||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||
Sbjct 2 TGAATGATGATTGAAGTGGTAGTAGCAGTGAAAAACAAAAGCAATCCAATCCCAAACCCA 61
Query 54 TTTGCTCTTAAGATTCTTCCTTCTTCACATAAGAGAAGTCGCATGTCCCTTCTTCTTCTT 113
||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||
Sbjct 62 TTTGCTCTTAAGATTCTTC-------ACATA-GAGAAGTCACATGTTCCTTCTTCTTCTT 113
Query 114 C-TTCA 118
| ||||
Sbjct 114 CCTTCA 119
> AT1G14920.1 | Symbols: GAI, RGA2 | GRAS family transcription
factor family protein | chr1:5149226-5151354 FORWARD LENGTH=2129
Length=2129
Score = 1122 bits (607), Expect = 0.0
Identities = 977/1156 (85%), Gaps = 24/1156 (2%)
Strand=Plus/Plus
Query 730 CGGCTGAGTCAACTCGTGC-TGTTATCCTGGTTGACTCACAAGAGAACGGTGTTCGTTTA 788
|||||||||||||||| || |||| ||||||||||||| || ||||||||||| ||| |
Sbjct 637 CGGCTGAGTCAACTCG-GCATGTTGTCCTGGTTGACTCGCAGGAGAACGGTGTGCGTCTC 695
Query 789 GTTCACGCGCTTATGGCTTGTGCTGAAGCAATCCAGCAGA-ACAATTTGACTCTAGCGGA 847
|||||||||||| ||||||| |||||||| | ||| | | | ||| ||||| |||||||
Sbjct 696 GTTCACGCGCTTTTGGCTTGCGCTGAAGCTGTTCAG-AAAGAGAATCTGACTGTAGCGGA 754
Query 848 AGCTCTTGTGAAGCAAATCGGATGCTTAGCTGTGTCACAAGCCGGAGCTATGAGAAAAGT 907
|||||| |||||||||||||||| |||||| || || ||| |||||| |||||||||||
Sbjct 755 AGCTCTGGTGAAGCAAATCGGATTCTTAGCCGTTTCTCAAATCGGAGCGATGAGAAAAGT 814
Query 908 CGCTACTTATTTCGCCGAAGCTCTTGCACGGCGGATCTACCGCCTCTCTCCGCCGCAGAA 967
||||||||| |||||||||||||| || |||||||| ||||| ||||||||| ||||||
Sbjct 815 CGCTACTTACTTCGCCGAAGCTCTCGCGCGGCGGATTTACCGTCTCTCTCCGTCGCAGAG 874
Query 968 TCAAATCGACCATTCTCTCTCCGATACTCTTCAGATGCACTTTTATGAGACTTGTCCTTA 1027
|| ||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 875 TCCAATCGACCACTCTCTCTCCGATACTCTTCAGATGCACTTCTACGAGACTTGTCCTTA 934
Query 1028 TCTTAAATTCGCTCACTTTACGGCGAATCAAGCGATTCTTGAAGCTTTTGAAGGTAAGAA 1087
||| || ||||||||||| |||||||||||||||||||| ||||||||| |||| |||||
Sbjct 935 TCTCAAGTTCGCTCACTTCACGGCGAATCAAGCGATTCTCGAAGCTTTTCAAGGGAAGAA 994
Query 1088 GAGAGTTCATGTCATTGATTTTTCTATGAACCAAGGTCTTCAATGGCCTGCGCTTATGCA 1147
|||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct 995 AAGAGTTCATGTCATTGATTTCTCTATGAGTCAAGGTCTTCAATGGCCGGCGCTTATGCA 1054
Query 1148 AGCTCTTGCGCTTCGAGAAGGAGGTCCTCCAACTTTCCGGTTAACCGGAATTGGTCCGCC 1207
||||||||||||||| || |||||||| |||||||||||||||||||||||| ||
Sbjct 1055 GGCTCTTGCGCTTCGACCTGGTGGTCCTCCTGTTTTCCGGTTAACCGGAATTGGTCCACC 1114
Query 1208 GGCGCCGGATAATT-CTGATCATCTTCACGACGTTGGCTGTAAATTAGCTCAGCTT-GCG 1265
||| |||||||||| | ||| ||||||| || ||||| ||||| | ||||| || ||
Sbjct 1115 GGCACCGGATAATTTC-GATTATCTTCATGAAGTTGGGTGTAAGCTGGCTCAT-TTAGCT 1172
Query 1266 GAGGTGATTCACGTTGAATTCGAATACCGTGGATTCGTCGCTAACAGCTT-AGCCGATCT 1324
|||| |||||||||||| || || ||| | ||||| || ||||||| ||| ||| |||||
Sbjct 1173 GAGGCGATTCACGTTGAGTTTGAGTACAGAGGATTTGTGGCTAACA-CTTTAGCTGATCT 1231
Query 1325 TGATGCGTCGATGCTTGAACTTAGACCGAGTGAGACGGAAGCTGTTGCGGTGAACTCTGT 1384
|||||| ||||||||||| |||||||| ||||||| ||| |||||||||| ||||||||
Sbjct 1232 TGATGCTTCGATGCTTGAGCTTAGACCAAGTGAGATTGAATCTGTTGCGGTTAACTCTGT 1291
Query 1385 TTTCGAGCTCCATAAACTCTTAGGTCGTCCCGGTGGGATAGAGAAAGTTCTCGGCGTTGT 1444
||||||||| || || ||||| || || || |||| ||| || || ||||| || || ||
Sbjct 1292 TTTCGAGCTTCACAAGCTCTTGGGACGACCTGGTGCGATCGATAAGGTTCTTGGTGTGGT 1351
Query 1445 GAAACAGATTAAACCGGTGATTTTCACGGTGGTTGAGCAAGAATCGAACCATAACGGACC 1504
||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||| | ||
Sbjct 1352 GAATCAGATTAAACCGGAGATTTTCACTGTGGTTGAGCAGGAATCGAACCATAATAGTCC 1411
Query 1505 GGTTTTCTTAGACCGGTTTACTGAATCGTTACATTACTATTCGAC-TCTGTTTGATTCGT 1563
| |||||||||| ||||||||||| ||||| ||||| || ||||| | ||||||| ||||
Sbjct 1412 GATTTTCTTAGATCGGTTTACTGAGTCGTTGCATTATTACTCGACGT-TGTTTGACTCGT 1470
Query 1564 TGGAAGGAGTTCCGAGTAGCCAAGACAAAGTCATGTCCGAAGTTTACTTAGGG-AAACAG 1622
||||||| || |||||| | |||||||| |||||||| || |||||||| ||| ||||||
Sbjct 1471 TGGAAGGTGTACCGAGTGGTCAAGACAAGGTCATGTCGGAGGTTTACTT-GGGTAAACAG 1529
Query 1623 ATTTGCAATC-TTGTGGCTTGTGAAGGTCCTGACCGGGTCGAGAGGCATGAAACGCTGAG 1681
|| ||||| | ||||||||||||| || |||||||| || ||| | ||||||||| ||||
Sbjct 1530 ATCTGCAA-CGTTGTGGCTTGTGATGGACCTGACCGAGTTGAGCGTCATGAAACGTTGAG 1588
Query 1682 TCAATGG-GGAAACCGGTTTGGTTCGTCC-GGTTTTGCGCCGGCAAATCTCGGGTCTAAC 1739
||| ||| |||| |||||| || || | | || |||||| | ||| || | || || ||
Sbjct 1589 TCAGTGGAGGAA-CCGGTTCGGGTC-TGCTGGGTTTGCGGCTGCACATATTGGTTCGAAT 1646
Query 1740 GCGTTTAAGCAAGCGAGTATGCTTTTGTCAGTGTAT-AATAGTGGCCAAGGTTATCGTGT 1798
||||||||||||||||||||||||||| | ||| | || | || | |||||||| ||
Sbjct 1647 GCGTTTAAGCAAGCGAGTATGCTTTTGGCTCTGT-TCAACGGCGGTGAGGGTTATCGGGT 1705
Query 1799 GGAGGAGAATAATGGATGTTTGATGTTGGGTTGGCACACTCGCCCGCTCATTA-CCACCT 1857
|||||||| | | || ||| | ||||||||||||||||| || |||||||| | ||||||
Sbjct 1706 GGAGGAGAGTGACGGCTGTCTCATGTTGGGTTGGCACACACGACCGCTCAT-AGCCACCT 1764
Query 1858 CCGCTTGGAAACTCTC 1873
| ||||||||||||||
Sbjct 1765 CGGCTTGGAAACTCTC 1780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105772548315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5