BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484074
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01580.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 896 0.0
> AT2G01580.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G07510.2);
Has 129 Blast hits to 129 proteins in 12 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:265044-265905
REVERSE LENGTH=862
Length=862
Score = 896 bits (485), Expect = 0.0
Identities = 555/590 (94%), Gaps = 0/590 (0%)
Strand=Plus/Plus
Query 90 ATTCATTGGTAATGGCAGATTCCGACATAGAGACGAGCAGCAACCACAATAGCAACAGCA 149
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 139 ATTCATTGGTAATGGCAGATTCCGACATAGAGACGAGCAGCAACCAAAATAGCAATAGCA 198
Query 150 ACACCAGCCGTTCAACCGCATCGACCACGAGTGTTCATGTTACGGCTCTCGATGGGATTG 209
||||||||| |||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 199 ACACCAGCCATTCAACTACTTCAACCACGAGTGTTCATGTTACGGCTCTCGATGGGATTG 258
Query 210 TAAGTGCTAATTCTCTCTTCACGGTTGCAGTCTTTGTCGGAATCTCCTTCGACCAGCCAC 269
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TAAGTGCTAATTCTCTCTTCACGGTTGCAGTCTTTGTCGGAATCTCCTTCGACCAGCCAA 318
Query 270 GTGACCTCAGCCTCACGGACAGATCCGAGTGCAATGCTGGACGAGACGTGGAACGGGACC 329
||||||||| ||||||||||||| | ||||||| ||| ||||||||||||||||| ||||
Sbjct 319 GTGACCTCACCCTCACGGACAGAACAGAGTGCAGTGCAGGACGAGACGTGGAACGTGACC 378
Query 330 TCGTTGTGTTTGAAGTCATCTCATTTGCCTTCTTCCTCTTCTCCTCCCTAGTGGCTCAAG 389
| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 379 TGGTTGTGTTTGAAGTCATCTCATTTGCCTTCTTTCTCTTCTCCTCCCTTGTGGCTCAAG 438
Query 390 GGATAAAGCTATCCATCAACCTTTTGAACAGCAAAGAAACGGACGAAGTGTTTAAAGCAA 449
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 439 GGATGAAGCTAGCCATCAACCTTTTGAACAGCAAAGAAACGGACGAAGTGTTTAAAGCGA 498
Query 450 ATATCAATAGTGATGTGCTTCGTTTCGGTGTGCTTGGTGCAGCTGGTGGATGTATCTTGG 509
||||||| || ||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 499 ATATCAACAGAGATGTGCTTCGTTTCGGTGTGGTTGGTGCAGCTGGTGGATCTATCTTGG 558
Query 510 GCTGTGTATTTCTTTTGTTGTCAATTGTTGATGTTATCCAACTCCGTCTGGGGCTTCTCT 569
| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 559 GTTGTGTATTTCTTCTGTTGTCAATTGTTGATGTTATACAACTCCGTCTGGGGCTTCTCT 618
Query 570 CCTGCGGCAATGCTTTGACGATTCATACCGTGCTAGCGCTTGTGGTCTTGGTCTCTTCTG 629
| ||||||||||||||| |||||||||||||||| | ||||||||| |||||||||||||
Sbjct 619 CTTGCGGCAATGCTTTGGCGATTCATACCGTGCTGGTGCTTGTGGTATTGGTCTCTTCTG 678
Query 630 CTCTCAGTGTTTACATCTTCACTGTGTTTTACTCTTTCAGGAAATGATTG 679
||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 679 CTCTCAGTGTTTATATCTTCACAGTGTTCTACTCTTTCAGGAAATGATTG 728
Score = 154 bits (83), Expect = 1e-36
Identities = 88/90 (98%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 1 TAAACCAAACACCACCCACTCTTAAACAACATTACCAAATCA-ATTCAAAAGGAAATCAT 59
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1 TAAACCAAACACCACCCACTCTTAAACAACATTACCAAATCATATTCAAAAGGGAATCAT 60
Query 60 AAGAACACAACAGAAGATTATGATCCACCA 89
||||||||||||||||||||||||||||||
Sbjct 61 AAGAACACAACAGAAGATTATGATCCACCA 90
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32853132138
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5