BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484077
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01630.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 3046 0.0
> AT2G01630.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr2:279282-282123 REVERSE LENGTH=1933
Length=1933
Score = 3046 bits (1649), Expect = 0.0
Identities = 1773/1833 (97%), Gaps = 7/1833 (0%)
Strand=Plus/Plus
Query 1 TTACTTCAGAGAACCTCGAGACCTGTCTTGTCTTTATGCTTCAGAAGCAAATCAAAGCAT 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 TTACTTGAGAGAACCTCGAGACCTGTCTTGTCTTTATGCTTCAGAAGCAAATCAAAGCAT 143
Query 61 CTCCCCAAGATTTGAAGCTCCATCAATGGCTGCCCTTCTTCTCCTTTTCCTTTTCCTCTT 120
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 144 CTCTCCAAGATTTGAAGCTCCATCTATGGCTGCCCTTCTTCTCCTTTTCCTTTTCCTCTT 203
Query 121 TGCAAGCTCTGCTCTCTCCCAAGATTCTTTGATCGGTGTGAATATTGGTACTGAAGTGAC 180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 204 CGCAAGCTCTGCTCTCTCTCAAGATTCTTTGATCGGTGTGAATATTGGTACTGAAGTGAC 263
Query 181 AAACATGCCAAGTCCAACACAAGTAGTAGCACTCCTCAAATCACAGAACATCAACCGTGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 264 AAACATGCCAAGTCCAACACAAGTAGTAGCACTCCTCAAATCACAGAACATCAACCGCGT 323
Query 241 CCGCCTCTATGACGCAGACCGCTCAATGCTTCTCGCGTTTGCTCACACCGGCGTTCAAGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 324 CCGCCTCTATGACGCAGACCGCTCAATGCTTCTCGCGTTTGCTCACACCGGGGTTCAAGT 383
Query 301 TATAATCTCAGTCCCTAACGACCAGCTTCTCGGTATCAGCCAATCAAACGCAACTGCAGC 360
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 384 TATAATCTCAGTACCTAACGACCAGCTTCTCGGTATCAGCCAATCAAATGCAACCGCAGC 443
Query 361 CAATTGGGTCACTAGAAATGTAGCTGCTTATTACCCTGCGACCAACATTACCACAATCGC 420
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 444 CAATTGGGTGACTAGAAATGTAGCTGCATATTACCCTGCGACCAACATTACCACAATTGC 503
Query 421 GGTCGGATCAGAAGTCCTAACCAGCCTACCAAACGCAGCGTCTGTCCTTGTCTCAGCCCT 480
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 504 TGTCGGATCAGAAGTCCTAACCAGCCTAACAAACGCAGCTTCTGTCCTTGTCTCAGCCCT 563
Query 481 CAAATACATCCAAGCTGCTCTCATCACCGCCAATCTTGACCGTCAGATCAAAGTATCGAC 540
||||||||| |||||||||||| |||| |||||||| |||||||||||||||||||||||
Sbjct 564 CAAATACATACAAGCTGCTCTCGTCACGGCCAATCTCGACCGTCAGATCAAAGTATCGAC 623
Query 541 CCCTCACTCTTCAACCATCATTCTTGATTCTTTCCCTCCTTCACAAGCTTTCTTCAACAA 600
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 624 ACCGCACTCTTCAACCATCATTCTTGATTCTTTCCCTCCTTCGCAAGCTTTCTTCAACAA 683
Query 601 GACTTGGGATCCAGTTATTGTCCCTCTCCTCAAATTCCTACAGTCCACAGGATCGCCATT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 GACTTGGGATCCAGTTATTGTCCCTCTCCTCAAATTCCTACAGTCCACAGGATCGCCATT 743
Query 661 GCTGCTCAACGTTTACCCGTATTTCGACTATGTTCAGTCCAATGGAGTTATACCGCTTGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GCTGCTCAACGTTTACCCGTATTTCGACTATGTTCAGTCCAATGGAGTTATACCGCTTGA 803
Query 721 CTATGCGCTTTTCCAGCCTCTCCAAGCCAACAAAGAAGCTGTAGACGCCAACACATTGTT 780
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 CTACGCGCTTTTCCAGCCTCTCCAAGCCAACAAAGAAGCTGTAGACGCCAACACATTGTT 863
Query 781 ACATTACACAAATGTTTTTGATGCAATTGTTGACGCTGCATATTTTGCAATGTCTTATCT 840
|||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 864 ACATTACACAAACGTTTTTGATGCAATCGTAGACGCTGCTTATTTTGCAATGTCTTATCT 923
Query 841 TAACTTCACCAACATTCCAATCGTGGTCACAGAATCCGGATGGCCATCTAAAGGAGGCCC 900
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 924 TAACTTCACCAACATTCCAATCGTGGTCACAGAATCTGGATGGCCATCTAAAGGAGGCCC 983
Query 901 GTCTGAGCATGACGCAACTGTAGAGAACGCAAACACTTACAATAGCAATTTGATCCAGCA 960
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 984 TTCTGAGCACGACGCAACGGTAGAGAATGCAAACACTTACAATAGCAATTTGATCCAGCA 1043
Query 961 CGTGATCAACAAGACTGGAACGCCAAAACACCCGGGAACTGCAGTTACTACATACATCTA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 TGTGATCAACAAGACTGGAACGCCAAAACACCCGGGAACTGCAGTTACTACATACATCTA 1103
Query 1021 CGAGCTTTACAATGAGGATACGAGGCCAGGACCGATATCTGAGAAGAATTGGGGGCTGTT 1080
|||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1104 CGAGCTTTACAACGAGGATACGAGGCCAGGACCGGTATCTGAGAAGAACTGGGGGCTGTT 1163
Query 1081 TTATACAAACGGGACTCCGGTTTACACATTGCGTTTGGCTGGTGCAGGGGCGATTCTGGC 1140
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1164 TTATACAAACGGGACTCCGGTTTACACATTGCGTTTAGCGGGTGCAGGGGCGATTCTGGC 1223
Query 1141 AAATGATACTACAAACCAGACATTTTGTATAGCGAAGGAAAAGGTTGATAAAAAGATGCT 1200
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1224 AAATGATACTACAAACCAGACATTTTGTATAGCGAAGGAAAAGGTTGATAGAAAGATGCT 1283
Query 1201 TCAGGCAGCTCTTGACTGGGCTTGCGGTCCAGGGAAAGTCGATTGCTCGGCACTGATGCA 1260
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1284 TCAAGCAGCTCTTGACTGGGCTTGCGGTCCAGGGAAGGTCGATTGCTCGGCACTGATGCA 1343
Query 1261 GGGAGAGTCATGTTATGAACCCGACGATGTGGTTGCACATTCTACTTATGCGTTTAATGC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 GGGAGAGTCATGTTATGAACCCGACGATGTGGTTGCACATTCTACTTATGCGTTTAATGC 1403
Query 1321 TTATTACCAGAAGATGGGAAAAGCTTCAGGAAGCTGTGATTTCAAAGGAGTTGCTACAGT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 TTATTACCAGAAGATGGGAAAAGCTTCAGGAAGCTGTGATTTCAAAGGAGTTGCTACAGT 1463
Query 1381 CACCACCACTGATCCAAGTCGAGGAACATGTGTGTTCCCTGGAAGTGCGAAAAGCAATCA 1440
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1464 CACCACCACTGATCCAAGTCGAGGAACATGCGTGTTCCCTGGAAGTGCAAAAAGCAATCA 1523
Query 1441 GACACTTGGAAACAACACCACGGCGTTAGCCCCCTCAGCGAACTCTACAACATCTGGATG 1500
||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1524 GACACTTGGAAACAACACCTCGGCGTTGGCCCCCTCAGCGAACTCTACAACCTCTGGATG 1583
Query 1501 CATCCCAAAGTACTATCA-C-CC-TCACGCATCTTTTGGTGACTTAACATTACTCTCCCT 1557
||||||||||||||||| | || |||||||||||| |||||||||||||||||||||||
Sbjct 1584 TATCCCAAAGTACTATCATCACCCTCACGCATCTTTCGGTGACTTAACATTACTCTCCCT 1643
Query 1558 TCTACTGATCGTTGCCTTAGTATTCTTGTAGAAACTCTGAAAAGAACAACAACAACTCTC 1617
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1644 TCTACTGATCATTGCCTTAGTATTCTTGTAGAAACTCTGAAAAGAACAACAAC---TCTC 1700
Query 1618 AATTCTTGTTTCTCTAAATTTTAACTTCTTTCTTTGCAACACTTGAGACAAAAGAGCTCG 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 AATTCTTGTTTCTCTAAATTTTAACTTCTTTCTTTGCAACACTTGAGACAAAAGAGCTCG 1760
Query 1678 GTGGGTTTGTTCTCTCTGTGTCTAGTTGTCTACCCAGTTTTGTTGATCATCTCCTTTTAA 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 GTGGGTTTGTTCTCTCTGTGTCTAGTTGTCTACCCAGTTTTGTTGATCATCTCCTTTTAA 1820
Query 1738 CAAGGAGTTCATTGAGGGTAGCCTGTAGGTTCGGCTTCAAGATCATCGATGATTGTAACT 1797
|| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1821 CATGGAGTTCATTGAGGGTAGCATGTAGGTTCGGCTTCAAGATCATGGATGATTGTAACT 1880
Query 1798 AATT-CCTGTGTTGAAAGCTTGATTCTTTCTTT 1829
|||| ||||||||||||||||||||||||||||
Sbjct 1881 AATTTCCTGTGTTGAAAGCTTGATTCTTTCTTT 1913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90511582635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5