BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484079
Length=569
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01640.1 | Symbols: | unknown protein; Has 51 Blast hits to... 835 0.0
> AT2G01640.1 | Symbols: | unknown protein; Has 51 Blast hits
to 51 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa
- 1; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes
- 7 (source: NCBI BLink). | chr2:283004-284158 FORWARD LENGTH=676
Length=676
Score = 835 bits (452), Expect = 0.0
Identities = 533/571 (93%), Gaps = 9/571 (2%)
Strand=Plus/Plus
Query 1 ATTAACCTGAGTTTGACATCGTTGAAAATTTGAAGACACAGAATGGGCAAACCAAGCAAA 60
||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 40 ATTAACCCGAGTTTGAAATCGTTGAAGATTTGAAGACACAGAATGGGCAAACCAAGCAAA 99
Query 61 GGATCGGAAGTGACGACGAAATCTGATAAGAAATTCGAGAAGAAGCTTCAATTTTACACA 120
|||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 100 GGATCGGAAGTGACAACGAAGTCTGATAAGAAGTTTGAGAAGAAGCTTCAATTTTACACA 159
Query 121 AAGGTCAAAGATACAGTTACTTCTTTGTCTGTTCAAAAGGAGATTGGCAAGAAGAAGAAA 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 160 AAGGTCAAAGATACAGTTACTTCTTTGTCTGTCCAAAAGGAGATTGGCAAGAAGAAGAAA 219
Query 181 ATCCGCAGCCGTCAAAAGAAGTTAAAGGCGTATGATCTCACCAACCTCTCGGAGTTTCTT 240
||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 220 ATCCGCAGCCGACAAAAGAAGCTAAAGGCGTATGATCTCACCAACCTGTCGGAGTTTCTT 279
Query 241 CCTGAGTTTAATGC-CTTGCAGAAGTCAGCTCTTCCTGCACCCGAGTTGAAGATGAACTG 299
|| ||||| ||||| || |||||| ||||||||||||||||||||| |||| ||||||||
Sbjct 280 CCCGAGTTCAATGCTCT-GCAGAAATCAGCTCTTCCTGCACCCGAGCTGAAAATGAACTG 338
Query 300 TAAAAGGCGACAAAAGCTCGTATTGACGGAAGGGGAAAGATTGAACAAGGTTCTAGACCA 359
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 339 TAAAAGGCGACAAAAGCTCGTATTGACAGAAGGGGAGAGATTGAATAAGGTTCTAGACCA 398
Query 360 TCCAGCTTTTCAAGCTGATCCAATTGGTTCAATATTTCAGCATTTGCAAAGTCAACAGCC 419
|||||||||||||||||||||| ||||||| ||||||||||| |||| |||||||||||
Sbjct 399 TCCAGCTTTTCAAGCTGATCCAGTTGGTTCGATATTTCAGCACTTGCTGAGTCAACAGCC 458
Query 420 ACCGGAGgaagagaagccgaagaagaagactaacacaaatggaagcaagaaaaggaataa 479
||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 459 ACCGGTGGAAGAGAAACCGAAGAAGAAGACTAACACTAATGGAAGCAAGAAAAGGAATAA 518
Query 480 gaaaaaaggaaagGCTGAATCCATGGATTTCTGATCTTGTCCTATAGAGATAAATTTACT 539
||||||||||||| |||| ||||||||||||||||||||||||||| || | || |||
Sbjct 519 GAAAAAAGGAAAGACTGATTCCATGGATTTCTGATCTTGTCCTATA-AG-T---TT-ACT 572
Query 540 TAtgttttgtttt-gttgttttgttATAGTA 569
||||||||||||| |||||||||||||||||
Sbjct 573 TATGTTTTGTTTTTGTTGTTTTGTTATAGTA 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27327375968
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5