BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484080
Length=1638
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01650.1 | Symbols: PUX2 | plant UBX domain-containing prote... 2588 0.0
> AT2G01650.1 | Symbols: PUX2 | plant UBX domain-containing protein
2 | chr2:284672-286493 REVERSE LENGTH=1655
Length=1655
Score = 2588 bits (1401), Expect = 0.0
Identities = 1564/1641 (95%), Gaps = 17/1641 (1%)
Strand=Plus/Plus
Query 1 AACAAGATCATCCTCTGATTTTTCAGACACAGATTTATAATTTAAAAAGTTTGTAGCTTT 60
||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||
Sbjct 6 AACAAGATCATCCTCTGATTTTTCAGACACATATTTGTAATTTATAAAGTTTGTAGCTTT 65
Query 61 TTGTTTAGCTTGAGATTACACGGGAGAAGAAGAAGATGGATGACGTTAAAGATAAGCTAA 120
|| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 66 TTCCTTAGCTTGAGATTACAC-GAAGAAGAAGAAGATGGATGACGTTAAAGATAAGCTAA 124
Query 121 AGGGATTCATGAAGAAAGTCAATCTCTCTTCTTCTTCCGGCAAATTCAAAGGCCAAGGTA 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 AGGGATTCATGAAAAAAGTCAATCTCTCTTCTTCTTCCGGCAAATTCAAAGGCCAAGGTC 184
Query 181 GGGTTCTCGGA---TCTTCTTCTTCCTCTGCACCTGGACCCGTTAACCCGATTCATAACC 237
||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 185 GGGTTCTCGGATCTTCTTCTTCTTCCTCTGCACC---ACCCGTTAACCCGATTCAGAACC 241
Query 238 GGTTTAACTCTTCCCAAGCTCCCAATCCGACTCCTAGACCCAAACCCAATTCGAATCCGT 297
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 242 GGTTTAACTCTTCCCAAGCTCCCAATCCGACTCCTAGACCCAAACCCAATCCAAATCCGT 301
Query 298 TGCCTGAGAAACCCATATCCTCCTCCGATCAGAAGATTAGTGGGTCAACGAGAAACCCGG 357
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TGCCTGAGAAACCCTTATCCTCCTCCGATCAGAAGATTAGTGGGTCAACGAGAAACCCGG 361
Query 358 ATCCTGACCCGGTTCGTGCTCCACAAGATGGGTTTGACCCGTTCGGTGCTTTGATAACGT 417
||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 362 ATCATGACCCGGTTCGTGCTCCACAAGATGGGTTTGACCCGTACGGTGCTTTCATAACGT 421
Query 418 CTTCGAACAGATCTCAGAACGGATATTCTCTGAATATGTTTGAGTGTCCGATCTGTAAAA 477
||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 422 CTTCGAACAGATCTCAGAACGGATATTCTCTGAGCATGTTCGAGTGTCCGATTTGTAAAA 481
Query 478 ATCCATTCACGTCAGAGGAAGAAGTCTCTGTTCATGTCGAGAGCTGTCTTGGGAACACTA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 482 ATCCATTCACGTCAGAGGAAGAAGTCTCTGTTCATGTCGAGAGCTGTCTTGGGGACACTA 541
Query 538 ATGGAGACGAATCTTCATTTGAGAAGGATGATACTAAGGATAATGATAAATCCGAAATCG 597
||||||||||||||||||||||||||||| | | ||| ||||| |||||||||||||| |
Sbjct 542 ATGGAGACGAATCTTCATTTGAGAAGGAT-A-A-TAATGATAACGATAAATCCGAAATGG 598
Query 598 AGAAACTTGTGGTTGTGTATCTCTCTGGGAAGCCAAGTGAGAGCTCCATTGATGTTTTGC 657
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 AGAAACTTGTGGTTGTGTATCTCTCTGGGAAGCCAAGTGAGAGCTCTATTGATGTTTTGC 658
Query 658 TTAGGTTGTTTAAGAACATAGTTAAAGAACCTGAGAATGCTAAGTTTAGAAAAGTTAGAA 717
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 TTAGGTTGTTTAAGAACATAGTGAAAGAACCTGAGAATGCTAAGTTTAGAAAAGTTAGAA 718
Query 718 TGAGCAATGCTAAGATTAAAGAAGCCATTGGTGATGTTGCTGGAGGTGTTGAGCTTCTTG 777
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 719 TGAGTAATGCTAAGATTAAAGAAGCTATTGGTGATGTTGCTGGAGGTGTCGAGCTTCTTG 778
Query 778 AGCTGGTTGGTTTTGAATTGAAAGAGGAAAATGATGAGATTTGGGCTGTTATGGATGTTC 837
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGTTGGTTGGTTTTGAATTGAAAGAGGAAAATGATGAGATTTGGGCTGTTATGGATGTTC 838
Query 838 CTGGTGAAGAACAATCGAAT-TTGATCAGTAAAGTTGTCGGGTTTCTAGAAAAGAGAAAG 896
|| ||||||||||||| || ||||||| |||||||||||| | ||||||||||||||||
Sbjct 839 CTAGTGAAGAACAATC-TATATTGATCAATAAAGTTGTCGGATATCTAGAAAAGAGAAAG 897
Query 897 ACAGAGAATTCAGGATCTTCTGTTCAGGTTATGGAACCTGTGGCTCCAAAGAAGATAGAT 956
||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 898 ACAGAGAGTTCAGGATCTTCAGCTCAGGTTATGGAACCTGTGGCTCCAAAGAAGATTGAT 957
Query 957 AGAGAGATTCGTGTCTTTTTCTCGGTTTCTGAAAACGTAGCATCGAGAATAGAGGTACCT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGAGAGATTCGTGTCTTTTTCTCGGTTTCTGAAAACGTAGCATCGAGAATAGAGGTACCT 1017
Query 1017 GATTCGTTCTATAGTCTCTCGGCGGATGAAATAAAGAGAGAAGCGGATTTACGGAGGAAA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GATTCGTTCTATAGTCTCTCGGCGGATGAAATAAAGAGAGAAGCGGATTTACGGAGGAAA 1077
Query 1077 AAGATTGCGGAATCACAGCTTTTGATTCCTCGATCTTATAAGGAGAAACAAGCAAAAGCA 1136
||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1078 AAGATTGCGGAGTCACAGCTTTTGATTCCAAGATCTTATAAGGAGAAACAAGCGAAAGCA 1137
Query 1137 GCTAGAAAGAGATACAAAAGAAGTATGATAAGAGTGCAGTTTCCAGACGGAGTTGTGCTT 1196
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1138 GCTAGAAAGAGATACAAAAGAAGTATGATAAGAGTGCAGTTTCCTGACGGAGTTGTGCTT 1197
Query 1197 CAAGGTGTGTTTGCTCCATGGGAACCTACCATTGCTCTCTACGAGTTTGTGAGCTCTGCT 1256
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1198 CAAGGTGTGTTTGCTCCATGGGAACCTACTTTTGCTCTCTATGAGTTTGTGAGCTCTGCT 1257
Query 1257 TTGAAAGAACCAAGTTTGCAGTTTGAGCTTCTTGATCCTGTACTGGTTAAACGGCGTGTG 1316
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1258 TTGAAAGAACCAAGTTTGCAGTTTGAGCTTCTGGATCCTGTGCTGGTTAAACGGCGTGTG 1317
Query 1317 ATTCCACATACTCCAGCCCCGGGACAGAAACCGATAACCTTAGAGGACGAAGAGCTTGTT 1376
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1318 ATTCCACATACTCCAGCCCCGGGACAGAAACCGATAACGTTAGAGGACGAAGAGCTTGTT 1377
Query 1377 CCTTCAGCGCTCATCAAGTTCAGACCGATAGAAACAGACTCTCTCGTCTTTACAGGACTC 1436
|| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1378 CCGTCAGCGCTCATCAGGTTCAGACCGATCGAAACAGACTCTCTCGTCTTTACAGGACTC 1437
Query 1437 CGCAATGAACTCCTGGAGATCAGTGAACCACTCTCGTGATCATTTGTGTTCCACAGAAGA 1496
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1438 CGCAATGAACTCCTGGAGATCAGTGAACCACTCTCGTGATCATTTGTGTTCCACTGATGA 1497
Query 1497 TTTAGCTTGAAACCATAAAATAAGTTTACAAATTTAGGTTTCTCTCTTGTATGGTGTGAT 1556
|||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1498 TTTAGCTTGAGCCCATGAAATAAGTTTACAAATTTAGGTTTCTCTCTTATATGGTGTGAT 1557
Query 1557 TAATGA-GATGATTTGTGTTGGTGATTCGAGCACATTTTATAGGTTTATGAA-AAATTTG 1614
| ||| ||||||||||||| |||||||||||||||||||||||||||| || |||||||
Sbjct 1558 T--TGATGATGATTTGTGTTTGTGATTCGAGCACATTTTATAGGTTTAT-AAGAAATTTG 1614
Query 1615 TGTCATTTGCACAATAACAAG 1635
||||||||||||||||| |||
Sbjct 1615 TGTCATTTGCACAATAAGAAG 1635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80923278540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5