BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484082
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01660.1 | Symbols: PDLP6 | plasmodesmata-located protein 6 ... 1764 0.0
> AT2G01660.1 | Symbols: PDLP6 | plasmodesmata-located protein
6 | chr2:290603-292590 REVERSE LENGTH=1331
Length=1331
Score = 1764 bits (955), Expect = 0.0
Identities = 1124/1204 (93%), Gaps = 17/1204 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaGTTGCGACGTTCTCATACTTTCTCGAATCACATACCACAGAGACAGAGAAAGa 60
||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||| |||
Sbjct 13 AAAAAAAGTCGCGACGTTCTCATTCTTTCTCGAAT--CATACCACAGAG--AGAGAGAGA 68
Query 61 a-aaaaaaaaGCAATCGTCGAAAGTCATGTTCGCTAC-AAAACTAGTTCTCTTTATCGCC 118
| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 69 ACAAAAAGAAGCAATCGTCGAAAGTCATGTTCGCTACAAAAAC-AGTTCTCTTTATCGCC 127
Query 119 GTCGTGTCACTTCTCGGAACATTTTCATCCGCCACCGTTGATACTTTCATCTACGGTGGT 178
|||||||||||||||||||| |||||||||||| | || |||||||| ||||||||||||
Sbjct 128 GTCGTGTCACTTCTCGGAACGTTTTCATCCGCCGCTGTCGATACTTTTATCTACGGTGGT 187
Query 179 TGCTCACAAGCAAAGTATTTTCCGGGATCGCCTTACGAGTCAAACGTAAACTCGCTACTA 238
|||||||||| |||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 188 TGCTCACAAGAAAAGTACTTTCCGGGATCGCCTTACGAGTCAAACGTTAACTCTCTACTC 247
Query 239 ACCTCATTCGTTAGCTCAGCTTCTCTCTACACATACAACAACTTCACCGTCAACGGAATC 298
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 248 ACCTCGTTCGTTAGCTCAGCTTCTCTCTACACATACAACAACTTCACCACCAACGGAATC 307
Query 299 TCCGGCGACA-TCTCCTCCGTCTACGGATTGTATCAGTGTCGCGGCGATCTCTCCTCAGG 357
|||||||||| | |||||||||||||| ||||| ||||||||||| ||||||||||| ||
Sbjct 308 TCCGGCGACAGT-TCCTCCGTCTACGGTTTGTACCAGTGTCGCGGTGATCTCTCCTCCGG 366
Query 358 CTCGGGAGATTGCGCAAGATGCGTTGCGAGAGCCGTTAGCAGACTCGGGAGTCTCTGCGC 417
|||||||||||| ||||||||||| ||| |||| || ||| | || ||||||||||||||
Sbjct 367 CTCGGGAGATTGTGCAAGATGCGTCGCGCGAGCAGTAAGCCGTCTAGGGAGTCTCTGCGC 426
Query 418 CATGGCGTGCGGGGGCGCGTTGCAGCTCGAAGGCTGTTTCGTTAAATATGACAACACGAC 477
|||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 427 CATGGCAAGCGGTGGCGCGTTGCAGCTCGAAGGCTGTTTCGTTAAATACGACAACACGAC 486
Query 478 GTTCCTCGGTGTGGAAGATAAGACGGTGGTGGTTCGCCGTTGTGGACCACCGGTTGGTTA 537
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 487 GTTCCTCGGTGTTGAGGATAAGACGGTGGTGGTTCGACGTTGTGGACCACCGGTTGGTTA 546
Query 538 TAACTCGGACGAGTTGAATCGTAGAGACTCGGTGGTGGGTTATTTAGCGGCGAGCAGCGG 597
||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| |||||
Sbjct 547 TAACTCGGACGAGATGACTCGTAGAGACTCGGTGGTGGGTTCTTTAGCGGCGAGTAGCGG 606
Query 598 TGGTTCATACAGAGTAGGAGTGTC-AGGGAATTTACAAGGTGTGGCGCAGTGCACCGGAG 656
|||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct 607 TGGTTCATACAGAGTAGGAGTGTCGGGGGAA-CTGCAAGGTGTGGCGCAGTGCACCGGAG 665
Query 657 ATCTCAGTGCGACCGAGTGTCAAGACTGTTTGATGGAAGCGATCGGACGGCTGAGATCGG 716
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 666 ATCTTAGTGCGACTGAGTGTCAAGACTGTTTGATGGAAGCGATCGGACGGCTGAGAACGG 725
Query 717 ATTGTGGAGGAGCTGCTTGGGGTGACGTGTACTTAGCCAAGTGCTACGCGCTTTACTCTG 776
|||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 726 ATTGCGGAGGAGCTGCTTGGGGTGACGTGTACTTAGCAAAGTGCTACGCGCGTTACTCTG 785
Query 777 CGCGTGGAGGACACTCTAGAGCCAACGGCTACGGTGGGAGTCG---TAACAATGATGACG 833
|||||||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||
Sbjct 786 CGCGTGGAGGTCACTCTAGAGCCAACGGCTATGGTGGGAATCGTAATAACAATGATGACG 845
Query 834 ATGAGATAGAGAAAACACTTGCAATCATAGTTGGCTTAATTGCTGGAGTTACGTTACTCG 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 ATGAGATAGAGAAAACACTTGCAATCATAGTTGGCTTAATTGCTGGAGTTACGTTACTCG 905
Query 894 TCGTATTTCTCTCTTTTATGGCAAAATCGTGCGAGAGAGGTAAAGGTGGGAAGTAAATAA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 TCGTATTTCTCTCTTTTATGGCAAAATCGTGCGAGAGAGGTAAAGGTGGGAAGTAAATAA 965
Query 954 CGTTATGGG-CTTTTGCCTTGTATCATCAATATATGTTTTTTAAA--GAATTAAATGCGT 1010
||||||||| |||||| |||||||||||||| |||| |||| ||| |||| ||||||||
Sbjct 966 CGTTATGGGACTTTTGACTTGTATCATCAATTTATGGTTTTAAAAAAGAATCAAATGCGT 1025
Query 1011 AAAAGAGAAAGAAAAGCGAAGAGATTCTTCACATTCTCCACTATAATCCTAAAGGATGTT 1070
||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1026 AAAGGAGAAAGAAAAGCGAAGAGATTCTTCATATTCTCCACTAAAATCCTAAAGGATGTT 1085
Query 1071 TCTTTTTTGACCCACTTTAATTTAAGTTTTACTATTTTTCAAATGTATAGAAAACTCTCG 1130
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1086 TCTTTTTTGACCCACTTTAATTGAAGTTTTACTATTTTTCAAATGTATAGAAAACTCACG 1145
Query 1131 CCGTTTAGATTTGTGATCGTCTCTTTACGTAAGAACATTTAAAAGTGGCGCATATGCAAT 1190
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1146 CCGTTTAGATTTGTGATCGTATCTTTACGTAAGAACATTTAAAAGTGGCGCATATGCAAT 1205
Query 1191 TTAT 1194
||||
Sbjct 1206 TTAT 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5