BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484085
Length=2841
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01690.2 | Symbols: | ARM repeat superfamily protein | chr2... 4366 0.0
> AT2G01690.2 | Symbols: | ARM repeat superfamily protein | chr2:308702-313805
REVERSE LENGTH=2983
Length=2983
Score = 4366 bits (2364), Expect = 0.0
Identities = 2608/2718 (96%), Gaps = 47/2718 (2%)
Strand=Plus/Plus
Query 158 GATTTTGGTTCCGAGAGAAGTTTTGCTTTTTGGTGGATTTCATCTGACAGACATGTCAGA 217
||||||| ||||||||||| |||| |||| |||||||||||||||||||||||||||||
Sbjct 255 GATTTTGACTCCGAGAGAAGGTTTGATTTTCGGTGGATTTCATCTGACAGACATGTCAGA 314
Query 218 CGCTCTTTCTGCGATTCCGGCCGCCGTTCATCGCAATCTCTCCGATAAACTCTATGAGAA 277
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 315 CGCTCTTTCTGCGATTCCGGCCGCAGTTCATCGCAATCTCTCCGATAAACTCTATGAGAA 374
Query 278 GCGCAAAAATGCTGCGCTTGAGCTTGAGAATATTGTGAAGAATCTAACTTCTTCGGGTGA 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GCGCAAAAATGCTGCGCTTGAGCTTGAGAATATTGTGAAGAATCTAACTTCTTCGGGTGA 434
Query 338 TCATGACAAGATCTCGAAAGTCATTGAGATGTTGATTAAGGAATTTGCCAAATCCCCTCA 397
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 435 TCATGACAAGATCTCGAAAGTCATTGAGATGTTGATTAAGGAATTTGCCAAATCTCCTCA 494
Query 398 AGCTAATCATCGAAAGGGTGGTCTAATTGGCTTAGCTGCTGTAACAGTTGGTTTGTCTAC 457
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 495 AGCTAATCATCGGAAGGGTGGTCTAATTGGCTTAGCTGCTGTAACTGTTGGTTTGTCTAC 554
Query 458 AGAAGCTGCACAATATCTTGAGCAAATAGTGCCACCTGTGATTAATTCCTTTTCTGATCA 517
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 AGAAGCTGCTCAATATCTTGAGCAAATAGTGCCACCTGTGATTAATTCCTTTTCTGATCA 614
Query 518 AGATAGCCGAGTTCGGTACTATGCATGTGAAGCTCTCTATAACATTGCAAAGGTTGTGCG 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 AGATAGCCGAGTTCGGTACTATGCATGTGAAGCTCTCTATAACATTGCAAAGGTTGTGCG 674
Query 578 AGGCGATTTCATTATTTTCTTCAATAAGATTTTTGATGCCTTATGCAAACTCTCAGCAGA 637
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 675 AGGCGATTTCATTATTTTCTTCAATAAGATATTTGATGCCTTATGCAAACTCTCAGCAGA 734
Query 638 TTCTGATGCCAATGTCCAAAGTGCTGCTCATCTTTTAGATCGCCTTGTTAAGCAGGATAT 697
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 735 TTCTGATGCCAATGTCCAAAGTGCTGCTCATCTTTTGGATCGCCTTGTTAAGCAGGATAT 794
Query 698 TGTGACGGAAAGCGATCAGTTCAGTATTGAGGAATTCATACCTCTTTTAAAAGAGCGCAT 757
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 795 TGTGACGGAAAGTGATCAGTTCAGTATTGAGGAATTCATACCTCTTTTAAAAGAGCGAAT 854
Query 758 GAACGTTCTAAACCCTTATGTTCGGCAATTTCTGGTTGGATGGATCACCGTTCTTGATAG 817
||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 855 GAACGTTCTCAACCCTTACGTCCGGCAATTTCTGGTTGGATGGATCACTGTTCTTGATAG 914
Query 818 TGTTCCAGACATTGATATGCTTGGGTTTTTGCCAGACTTTCTCGATGGGTTATTCAATAT 877
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 915 TGTTCCAGACATTGACATGCTTGGGTTTCTGCCAGACTTTCTCGATGGGTTATTCAATAT 974
Query 878 GTTGAGCGACTCTAGTCATGAAATTA-GACAGCAGGCTGATTCAGCTCTTTCAGAGTTTC 936
||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||
Sbjct 975 GTTGAGCGACTCTAGTCATGAAA-TACGACAGCAAGCTGATTCAGCTCTTTCAGAGTTTC 1033
Query 937 TTCAAGAAATAAAAAATTCACCATCTGTAGATTATGGTCGCATGGCTGAAATACTGGTGC 996
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 TTCAAGAGATAAAAAATTCACCATCTGTAGATTATGGTCGCATGGCTGAAATACTGGTGC 1093
Query 997 AGAGGGCTGCTTCTCCTGATGAATTCACTCGATTAACAGCCATTACGTGGATAAACGAGT 1056
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1094 AGAGGGCTGCTTCTCCTGATGAATTCACTCGATTAACAGCCATCACGTGGATAAACGAGT 1153
Query 1057 TTGTAAAACTTGGGGGAGACCAGCTTGTGCGTTATTATGCTGATATTCTTGGGGCTATCT 1116
| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1154 TCGTAAAACTTGGGGGAGACCAGCTCGTGCGTTATTATGCTGACATTCTTGGGGCTATCT 1213
Query 1117 TGCCTTGCATATCTGACAAAGAAGAGAAAATCAGGGTGGTTGCTCGTGAAACCAATGAAG 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 TGCCTTGCATATCTGACAAAGAAGAGAAAATCAGGGTGGTTGCTCGTGAAACCAATGAAG 1273
Query 1177 AACTTCGTTCAATCCATGTTGAACCCTCAGATGGTTTTGACGTTGGCGCAATTCTCTCTG 1236
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1274 AACTTCGTTCAATCCATGTTGAACCCTCAGATGGTTTTGATGTTGGCGCAATTCTCTCTG 1333
Query 1237 TTGCAAGGAGGCAGCTATCAAGTGATTTTGAGGCTACTCGGATTGAAGCATTGAATTGGA 1296
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1334 TTGCAAGGAGGCAGCTATCAAGTGAGTTTGAGGCTACTCGGATTGAAGCATTGAATTGGA 1393
Query 1297 TATCAACACTTTTGAACAAGCATCGTACTGAGGTCTTGTGCTTCCTGAATGACATATTTG 1356
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 TATCAACACTTTTAAACAAGCATCGTACTGAGGTCTTGTGCTTCCTGAATGACATATTTG 1453
Query 1357 ACACCCTTCTAAAAGCACTATCTGATTCTTCTGATGACGTGGTGCTCTTGGTTCTGGAGG 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 ACACCCTTCTAAAAGCACTATCTGATTCTTCTGATGACGTGGTGCTCTTGGTTCTGGAGG 1513
Query 1417 TTCATGCTGGTGTAGCAAAAGATCCACAACACTTTCGCCAGCTCATTGTATTTCTAGTCC 1476
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1514 TTCATGCTGGTGTAGCAAAAGATCCACAACACTTTCGCCAGCTCATCGTATTTCTTGTCC 1573
Query 1477 ACAATTTCCGAGCTGATAATTCTCTTTTGGAAAGGCGTGGTGCCCTTATCGTCCGAAGAA 1536
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1574 ACAATTTCCGAGCTGATAATTCTCTTTTGGAAAGGCGCGGTGCCCTTATTGTCCGAAGAA 1633
Query 1537 TGTGTGTACTTTTGGATGCCGAAAGAGTCTACCGAGAGCTCTCTACAATTCTTGAGGGAG 1596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 TGTGTGTACTTTTGGATGCCGAAAGAGTCTACCGAGAGCTCTCTACAATTCTTGAGGGAG 1693
Query 1597 AAGATAATCTTGACTTTGCTTCTACCATGGTTCAGGCATTGAATTTGATTTTGCTTACAT 1656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1694 AAGATAATCTTGACTTTGCTTCTACCATGGTTCAGGCATTGAATTTGATTTTGCTTACTT 1753
Query 1657 CCCCGGAGTTATCGAAACTAAGAGATCTATTAAAAGGTTCACTCGTCAATCGCGAAGGGA 1716
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1754 CCCCGGAGTTATCGAAACTGAGAGAACTATTAAAAGGTTCACTCGTCAATCGCGAAGGGA 1813
Query 1717 AAGAACTTTTCGTTGCCTTGTATACTTCATGGTGCCATTCACCCATGGCAATTATAAGCC 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1814 AAGAACTTTTCGTTGCCTTGTATACTTCATGGTGCCATTCACCCATGGCAATTATAAGCC 1873
Query 1777 TCTGCTTATTAGCTCAGGCTTACCAGCATGCGAGTGTTGTGATTCAATCATTGGTAGAAG 1836
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1874 TCTGCTTATTAGCTCAGGCTTACCAGCATGCGAGTGTCGTGATTCAATCATTGGTAGAAG 1933
Query 1837 AAGACATTAACGTCAAATTTCTAGTACAGCTTGATAAATTGATCCGGCTTCTTGAAACTC 1896
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1934 AAGACATTAACGTCAAATTTCTAGTACAGCTTGATAAATTGATCCGGCTTCTGGAAACTC 1993
Query 1897 CAATCTTTACTTACCTTAGATTGCAGCTTCTGGAACCAGGAAGGTACACATGGTTGCTGA 1956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1994 CAATCTTTACTTACCTTAGATTGCAGCTTCTGGAACCAGGAAGGTACACATGGTTGCTGA 2053
Query 1957 AAACACTTTATGGTCTTCTAATGTTACTTCCTCAGCAAAGTGCGGCGTTCAAGATACTTA 2016
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2054 AAACACTTTATGGTCTTCTTATGTTACTTCCTCAGCAAAGTGCGGCGTTCAAGATACTTA 2113
Query 2017 GGACAAGACTCAAAACTGTACCAACGTACTCCTTCAGTACTGGAAACCAAATAGGCAGAG 2076
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 2114 GGACAAGACTCAAAACTGTGCCAACGTACTCATTCAGTACTGGAAACCAAATAGGCAGAG 2173
Query 2077 CAACTTCAGGAGTTCCTTTCTCTCAGTATAAGCATCAAAACGAGGATGGTGACTTAGAAG 2136
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2174 CAACTTCAGGAGTTCCTTTCTCTCAGTATAAGCATCAAAACGAGGACGGTGACTTAGAAG 2233
Query 2137 AGGATAATATCAACAGTTCTCACCAAGGAATCAATTTTGCTGCGCGGCTACAACAGTTTG 2196
| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 2234 ACGATAACATCAACAGTTCTCACCAAGGAATCAATTTTGCTGTGCGGCTACAACAGTTCG 2293
Query 2197 AGAACGTACAAAATCTACATCGTGGCCAGGCAAGGACTAGAGTGAACTACTCATATCACA 2256
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2294 AAAACGTACAGAATCTACATCGTGGCCAGGCAAGGACTAGAGTGAACTACTCATATCACT 2353
Query 2257 CTTCCTCTTCTTCTACATCAAAGGAGGTGAGGAGATCTGAAGaacaacaacagcagcaac 2316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2354 CTTCCTCTTCTTCTACATCAAAGGAGGTGAGGAGATCTGAAGAACAACAACAGCAGCAGC 2413
Query 2317 aacaacaacaacaacaacaacagcaacaacaacGACCACCACCTTCTTCGACATCATCAT 2376
| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2414 AGCAACAACAACAGCAACAACAACAACAACAACGACCACCACCTTCTTCGACATCATCAT 2473
Query 2377 CAGTTGCAGACAACAATCGACCTCCATCAAGATCTTCAAGAAAAGGCCCTGGTCAATTAC 2436
|||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2474 CAGTTGCAGATAACAATAGACCTCCATCAAGAACTTCAAGAAAAGGCCCTGGTCAATTAC 2533
Query 2437 AGCTTTAACCTACCTGGtaatcaatcataaataataaataatat-caatccccgacaatc 2495
||||||||||||||||||||||| | | || ||||||||||||| | |||||||||||||
Sbjct 2534 AGCTTTAACCTACCTGGTAATCA-T-A-AA-TAATAAATAATATTCCATCCCCGACAATC 2589
Query 2496 atcatcatcTTCTTCTTCTTTGTGTGGACACCACCGATCCCTTTTGTCTCCTGTAAAATT 2555
|||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2590 ATCATC-T-T-CATCTTCTTTGTGTGGACACCACCGATCCCTTTTGTCTCCTGTAAAATT 2646
Query 2556 GTATATCTCTCTTTTTTAGTAACTCTTCAAGTTTCGACGGAACTTGTGGAAAAGCTACGG 2615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2647 GTATATCTCTCTTTTTTAGTAACTCTTCAAGTTTCGACGGAACTTGTGGAAAAGCTACGG 2706
Query 2616 TCGTGTCCATCctctct--ctctctGTCGGGtttttttttttttttttACGAGAGATTCT 2673
||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||
Sbjct 2707 TCGTGTCCATCATCTCTTTCTCTCTGTCGGGTTTTTTTTATTT-----ACGAGAGATTCT 2761
Query 2674 TCTCCAGTCCCTCAGTCTACCTT-ATAtt-ttttt--GGG--TTTC--GTTTCTT-GAAT 2724
||| ||||||||||||||||||| ||||| ||||| ||| |||| ||||||| ||||
Sbjct 2762 TCTTCAGTCCCTCAGTCTACCTTTATATTGTTTTTTTGGGGGTTTCTCGTTTCTTTGAAT 2821
Query 2725 TTGTTTCATTGTTTGGAGCTTTT----------------G---A--TGTAAGAAAAAGAA 2763
||||||||||||||||||||||| | | ||||||||||||||
Sbjct 2822 TTGTTTCATTGTTTGGAGCTTTTTATATTTTTACCTTATGTGGAGATGTAAGAAAAAGAA 2881
Query 2764 GTGATCATGTGGTTTTGTGTTGtttttttATAACTGGAAAACCACATGAGTTTGTAGAGA 2823
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2882 GTGATCATGTGGTTTTGTGTTGTTTTTTTATAACTGGAAAACCACATGAGTTTGTAGAGG 2941
Query 2824 TGACTTATTGGATATTTT 2841
| ||||||||||||||||
Sbjct 2942 TCACTTATTGGATATTTT 2959
Score = 222 bits (120), Expect = 1e-56
Identities = 161/178 (90%), Gaps = 14/178 (8%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaaTCAGAAA-TATGTTTATGCAGAAATCGAATTGGAGAAACCGAGTAACT 59
|||||||||| |||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 57 AAAAAAAAAAGATCAGAAATTA-GTTTGTGCAGAAATCGAATTGGAGAAACCGAGTAACT 115
Query 60 --GGTAGCCACAGATGAGTTCGTCGTTTTTGACCAGATCTGATTGTTTTCGTCTTT-CAC 116
||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 116 ATGGTAGCCACAGATGAGTTCATCGTTTTTGACCAGATCTGATTGTTTTCGTCTTTGC-C 174
Query 117 GTTGAA-TAATCCTCCGCCTCCTTCTTCTC-TC-AT--C-C-GATCGCGATTTTGGTT 167
|||||| ||||||||||| ||||||||||| || || | | ||||||||||||||||
Sbjct 175 GTTGAAATAATCCTCCGC-TCCTTCTTCTCATCGATTTCTCCGATCGCGATTTTGGTT 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141169777602
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5