BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484087
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01710.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1347 0.0
> AT2G01710.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr2:315726-316993 FORWARD LENGTH=1268
Length=1268
Score = 1347 bits (729), Expect = 0.0
Identities = 955/1059 (90%), Gaps = 35/1059 (3%)
Strand=Plus/Plus
Query 1 GACCATATTTACACAGAGCCAATCAGAGCCTTGTTTCATCG--TCTTGTCGAGGAGGCGA 58
|||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1 GACCATTTTTACACACAGCCAATCAGAGCCTTGTTTCATCGTCTCTTGTC---GAGGCGA 57
Query 59 TAATA-TTAGATCTGCTCACCATTTCTCCGCCATCG-C--C-------G-AAGATGGGAG 106
||||| |||||||||||||||||||||||||||||| | | | ||||||||||
Sbjct 58 TAATATTTAGATCTGCTCACCATTTCTCCGCCATCGCCGACGGAAGAAGAAAGATGGGAG 117
Query 107 ACAACAACCCTAACCGACCAGAAGCCGAGCGTCTTCTCGGAATCGCAGAGAAGCTTCTGG 166
||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||||| |
Sbjct 118 ACAACAACCCTAACCGATCAGAAGCAGAACGTCTTCTCGGAATCGCGGAGAAGCTTCTCG 177
Query 167 AGTCACGAGATCTCAACGGTTCAAAAGAGTTTGCAATCTTAGCTCAAGAAACAGAGCCAC 226
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 178 AGTCACGAGATCTAAACGGTTCAAAAGAGTTTGCAATCTTAGCTCAAGAGACAGAGCCAC 237
Query 227 TCCTCGAAGGCACCGATCAAATCCTCGCCGTCGTCGATGTCCTCCTCTCATCTTC-CTCA 285
||||||||||||||||||||||||||||||||||||||||| | |||||||| | | ||
Sbjct 238 TCCTCGAAGGCACCGATCAAATCCTCGCCGTCGTCGATGTCTTACTCTCATCAGCAC-CA 296
Query 286 GAGAATCGCATCAAAAACCAACCAAACTGGTACAAAATCCTTCAGATCGAAGATCCAAAT 345
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 297 GAGAATCGTATCAAAAACCAACCAAACTGGTACAAAATCCTTCAGATCGAAGATCTAACT 356
Query 346 GAATCATCAACAGACAACGATCTAATCAAGAAACAATACCGTCGTCTGGCTCTTCTTCTC 405
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 357 GAATCATCAACAGACAACGATCTAATCAAGAAACAATACCGTCGTCTTGCTCTTCTTCTC 416
Query 406 CACCCAGACAAAAACCGCTTCCCTTTCGCCGATCAAGCTTTCAGATTCGTGCTTGATGCA 465
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CACCCTGACAAAAACCGTTTCCCTTTCGCCGATCAAGCTTTCAGATTCGTGCTTGATGCA 476
Query 466 TGGGAAGTTCTATCAACACCTTCAAAGAAATCTCAATTCGATCGAGATTTGAATCTCATC 525
||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct 477 TGGGAAGTTCTATCAACACCTACGAAGAAATCTCAATTCGATGGAGATTTGAATCTCATC 536
Query 526 TTCACAAAAGTAGATCTCAATACTCAAAAATCGAAGAAGAAATCAACAACCAATGAGAAG 585
||||| |||||| ||||||| ||||| ||||||||||||||| ||||||| |||||||||
Sbjct 537 TTCACTAAAGTAAATCTCAACACTCAGAAATCGAAGAAGAAAACAACAACGAATGAGAAG 596
Query 586 ATGGCTACGTTTTGGACGGCGTGTCCGTATTGTTACAGTCTTCATGAGTATCCTAGGGTT 645
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 597 ATGTCTACGTTTTGGACGGCGTGTCCGTACTGTTACAGTCTTCATGAGTATCCTAGGGTT 656
Query 646 TATCATGAGTATTGTATCAGATGTCAAAACTGTCAAAGAGCGTTTCACGCGGCGAGTATT 705
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 657 TATCAAGAGTATTGTATTAGATGTCAAAACTGTCAAAGAGCGTTTCACGCTGCGAGTATT 716
Query 706 CCTCAATTGCCTCCGTTGGTTCCTGGAAAAGATGAGTATTATTGTTGTTGGGGGTTTTTT 765
||||| |||||||||||| | ||||| |||||||||||||||||||||||||| ||||||
Sbjct 717 CCTCAGTTGCCTCCGTTGATACCTGGTAAAGATGAGTATTATTGTTGTTGGGGTTTTTTT 776
Query 766 CCGATGGGATTTGTTGGTGGTAAAGGAGGAGAAGCCGCCATTGCTAACGGAGTTGATGCA 825
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 777 CCGATGGGGTTTGTTGGTGGTAAAGGAGGAGAAGCTGCCATTGCTAATGGAGTAGATGCA 836
Query 826 GCCAAATTCCCTAATTGGATGCCGCCGGTTTTCTCATCCGGCGGCGTTGCAGCTCCTCCA 885
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 837 GCTAAGTTCCCTAATTGGATGCCTCCGGTTTTCTCATCCGGCGGCGTTGCAGCTCCTCCA 896
Query 886 AGTGTTAATGGTGGCGGAT---ACGG--GGTTAGCTT-TGATG-GATG-GTCAGG-TG-G 935
|||| |||||||| | | | || ||| || | || | || | | | || |
Sbjct 897 AGTGGTAATGGTGTTAGTTTTGATGGATGGTCAGGTGGTGCGGCGAAGAGAGATAATGAG 956
Query 936 TGCAGCGAAGAG-AGACAACG-T-T-GGAGTTAATTTAGATGGAACGCCGAAGAAGAGAG 991
|| | || ||| | | || | | | |||||||||| ||||||||| |||||||||||||
Sbjct 957 -GCTGTGAGGAGTA-ATAATGGTGTTGGAGTTAATTCAGATGGAACACCGAAGAAGAGAG 1014
Query 992 GAAGAGGAAGGCCCAAGAAGAATCCGGTTTAGTGATCTC 1030
||||||||||||| |||||||||||||||||||||||||
Sbjct 1015 GAAGAGGAAGGCCGAAGAAGAATCCGGTTTAGTGATCTC 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5