BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484088
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01720.1 | Symbols: | Ribophorin I | chr2:317030-320264 REV... 2604 0.0
> AT2G01720.1 | Symbols: | Ribophorin I | chr2:317030-320264 REVERSE
LENGTH=1719
Length=1719
Score = 2604 bits (1410), Expect = 0.0
Identities = 1622/1723 (94%), Gaps = 19/1723 (1%)
Strand=Plus/Plus
Query 1 CTAATCCCTAAATCACGAGAGAAGTGAGAGAGACTGAGACTTTTGTAGTTGACCGGATCA 60
||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 6 CTAATCCCTAAATCAAGAGAGAAGTGAGAGACACTGAGAC-TTTGTAGTTGACCGGATCA 64
Query 61 TTCTCACTTCGCCGGCCGACGTTCTTCCTTCCGCCGTCGGTATCTGTCTGTACGATCCAC 120
||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 65 TTCTCACTTCGCCGGCCGACGTTCTTCCTTCCGCCGTCGGTATCTATATTTACGATCCAC 124
Query 121 GATCTCTCTCACTCTATCTTTCCTCATCGTGACGAAAATGGCTGCTCGTATCGGGAACTT 180
||||||||| || | ||| || ||||||||||||||||||||||||||||||||| |||
Sbjct 125 GATCTCTCTTGCTGTTTCTGTCTTCATCGTGACGAAAATGGCTGCTCGTATCGGGATCTT 184
Query 181 CTTCGTCTTCGTAGCTGTATTCTTATCTATCTCTGCATTTTCCTCAGCTCAGGATCTCCA 240
|| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 185 CTCCGTCTTCGTAGCTGTATTGTTATCTATTTCTGCATTTTCCTCAGCTCAGGATCTCCA 244
Query 241 GATCGTAAATGCCGAGCGAAGGATTGATTTAAGCTCACATATCGTGAAGGCCTTCTTGAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GATCGTAAATGCCGAGCGAAGGATTGATTTAAGCTCACATATCGTGAAGGCCTTCTTGAC 304
Query 301 TCTCAAGGTCGAAAATATTGGGAAAGATCCTGCTCCAGAAATGCTTCTTGCTTTCCCACC 360
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 305 TCTCAAGGTTGAAAATATTGGGAAAGATCCTGCTGCAGAAATGCTTCTTGCTTTCCCACC 364
Query 361 TACCCAGATCAAGAATTTGGCTATGGTACAAGCCCTGGCAATTACTGGCAAGAAGAAGAA 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 365 TACCCAGATCAAGAATTTGGCTATGGTACAAGCCCTGGCAACTACTGGCAAGAAGAAGAA 424
Query 421 GAAAACCTATTTGCCACTAGATGTTAAACCAACTGAACTAGCTGATGCACCAAATGACAC 480
|||||| ||||||||| ||||||| ||||||||||||| | |||||||||||||||||||
Sbjct 425 GAAAACTTATTTGCCATTAGATGTAAAACCAACTGAACAACCTGATGCACCAAATGACAC 484
Query 481 TGGATTCTACCGTGTTAAGTTTGTTACCCCCTTAGGCCCGGGTGAAACTGTTTCACTTGA 540
||||| ||||||||||| |||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 485 TGGATACTACCGTGTTACGTTTATTAGCCCCTTAGGTCCGGGTGAAACTGTTTCACTTGA 544
Query 541 GGTGCTTTACATATTGACTCATTCTTTGGAGCCTTTCCCAGTGGAGATAACCCAGTCAGA 600
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 545 GGTGCTTTACATATTGACTCATTCCTTGGAACCTTTCCCAGTGGAGATAACCCAGTCAGA 604
Query 601 ATCTCAGTTGGTTTACTACCATGATAGTGCAGTGATATTGTCACCATATCATATTAAGCA 660
|||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct 605 ATCTCAATTGGTTTACTATCATGATAGTGCAGTGATATTGTCACCGTATCATGTTAAGCA 664
Query 661 ACAGACAACTTTTGTTAAGACTCCTAGTACTAGAGTAGAGTCGTTCACTAGCATCGAACC 720
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 665 ACAGACAACTTTTATTAAGACTCCTAGTACTAGAGTAGAGTCGTTCACTAGCATTGAACC 724
Query 721 TGCTAACCGGGCTGGCAAAGAGATCAAATATGGACCATATGAGAATCGTGCTTCATACTC 780
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 725 TGCTAACCGGGCTGGCAAAGAGATCAAATATGGACCATATGAAAATCGTGCTTCATACTC 784
Query 781 TTACACACCTGTCATCATTCACTTCGAGAATAACAGTCCGTTTGCCGTTGTTGAGGAGCT 840
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 785 TTACACACCTGTCATCATTCACTTCGAGAATAACAGTCCATTTGCTGTTGTTGAGGAGCT 844
Query 841 TGTGCGTGAAATTGAGATTTCACACTGGGGTAGCCTTCAGATAACAGAAAATTATAGGTT 900
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 845 TGTGCGTGAAATTGAGATTTCACACTGGGGTAGCCTTCAGATTACAGAAAATTATAGGTT 904
Query 901 GACTCATGGGGGAGCGCGGCATAAGGGTGTTTTCTCGAGGGTTGATTATCAATCTAAACG 960
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 905 GACTCATGGGGGAGCGAGGCATAAGGGTGTTTTCTCAAGGGTTGATTATCAATCTAAACG 964
Query 961 GTCCGTCAGTGGTGCATCCTCTTTCAATGCGCTACTTGCAGTACTGCCTCCCAGAGTGAA 1020
|| ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 965 ATCGGTCAGTGGTGCATCCTCTTTCAATGCGCTCCTTGCAGTCCTACCTCCCAGAGTGAA 1024
Query 1021 CTCTGTGTACTACAGGGATAACATAGGAAACATCTCAACTTCACATTTGCGTACAGGCTT 1080
|||||| |||||||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 1025 CTCTGTCTACTACAGGGATGAGATAGGAAACATCTCTACTTCACATTTGCGTACAGGCTT 1084
Query 1081 TAGAAAGTCAGAACTTGAATTTGAACCGCGGTACCCATTATTTGGAGGGTGGAGTGCAAC 1140
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1085 TAGAAAGTCAGAACTTGAATTTGAACCCCGCTACCCATTATTTGGAGGGTGGAGTGCAAC 1144
Query 1141 TTTTGTCATCGGCTATAGAGTTCCATTGGAAGATTATCTCTTTGAAGCATCTGATGGCCG 1200
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1145 TTTTATCATCGGCTATAGAGTTCCATTGGAAGACTATCTCTTTGAAGCATCTGATGGCAG 1204
Query 1201 ACGTTACTTGAACTTTACCTTTGGGTGCCCCCTTGTCGAAACTATAGTGAACAAGTTGAC 1260
|||||||||||||||||||||||||||||| || ||||||||||| || |||||||||||
Sbjct 1205 ACGTTACTTGAACTTTACCTTTGGGTGCCCGCTCGTCGAAACTATTGTTAACAAGTTGAC 1264
Query 1261 TCTCAAAGTTGTGCTTCCTGAAGGATCAAAGGACCCTTCTGCTGTTTTGCCCTTTACAGT 1320
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 TATCAAAGTCGTGCTTCCTGAAGGATCAAAGGACCCTTCTGCTGTTTTGCCCTTTACAGT 1324
Query 1321 AAATCAAGAGTTAG-AGGTCAAATACTCATACCTTGACATTGTGGGAAGAACCGTGGTTG 1379
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 CAATCAAGAGTT-GCAGGTCAAATACTCATACCTTGACATTGTGGGAAGAACCGTGGTTG 1383
Query 1380 TGTTGCAAAAAGATAATGTAGTTCCCACTCACAACGTACCCTTCCAGGTGTACTATACAT 1439
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 TGTTGCAAAAAGATAACGTAGTTCCCACTCACAACGTACCCTTCCAGGTGTACTATACAT 1443
Query 1440 TCAAACCAATATACATGCTTGCGGAACCATTCATGCTTGTATCGGCTTTCTTCTTAGTAT 1499
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 TCAAACCAATATACATGCTAGCGGAACCATTCATGCTTGTATCGGCTTTCTTCTTAGTAT 1503
Query 1500 TTGTGACTTCGCTTGCGTATGTACACATTGATCTCAATATTGTCAGGAAGTAGAAGTCTT 1559
||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1504 TTGTGGCTTCGCTTGCGTATGTACACATCGATCTCAATATCGTCAGGAAGTAGAAGTCTT 1563
Query 1560 ATGAAAAGTCATTTGCTTTCACTTATAGACTCGTAAAAGAAGATACTTTATTACTTTTGA 1619
|| || |||| || ||||||||||||||||||||||||||| ||||||| | | | | |
Sbjct 1564 ATCAACAGTCCTTCGCTTTCACTTATAGACTCGTAAAAGAAAATACTTT-TGA-TCATCA 1621
Query 1620 -T-GAAGAACTAAACTTTGTAGTTGTTGC--CTTT-AGTAG--TTGTATCTTTGACGCTC 1672
| ||||||||||||||||||| |||||| |||| ||||| || |||||||||| ||
Sbjct 1622 CTTGAAGAACTAAACTTTGTAGGTGTTGCTGCTTTTAGTAGAGTTATATCTTTGACACT- 1680
Query 1673 TTTACTTTCCTCTCCAATCTTTGATTT--CCTCAATTTTGTTT 1713
||||| |||||||||||| ||||| |||||||||| |||
Sbjct 1681 ---ACTTTGCTCTCCAATCTT-GATTTTTCCTCAATTTTATTT 1719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84688319415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5