BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484093

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G01755.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   678    0.0  


> AT2G01755.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; Has 120 Blast hits to 120 proteins 
in 52 species: Archae - 0; Bacteria - 80; Metazoa - 0; 
Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 16 (source: 
NCBI BLink). | chr2:332194-332781 REVERSE LENGTH=588
Length=588

 Score =  678 bits (367),  Expect = 0.0
 Identities = 478/528 (91%), Gaps = 22/528 (4%)
 Strand=Plus/Plus

Query  1    ATATCACAATGCTTATCACGCCGGCGAGTTTATGCGGTGGCTTAGCCGGATTATTCGTTT  60
            |||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct  4    ATATCAGAATGCTTATCACGCCGGCGAATTTATCCGGTGGCATAGCCGGATTATTCGTTT  63

Query  61   TCGGACAGAAAGCT-AGAATGACGAAAATACCCTCACTCACAAATTCGAATAACTACC-G  118
            |||||||||||| | | |||||| ||||||||||| |||||||| ||| ||||||||| |
Sbjct  64   TCGGACAGAAAGATCA-AATGACTAAAATACCCTCGCTCACAAACTCGTATAACTACCGG  122

Query  119  AAACACCCTTTTCAGCGTCCCTCCGGTGGC-----G--G-AGA-----GAAGA--TTCCG  163
            ||| |  ||||||| ||||||||| |||||     |  | |||     |||||  ||| |
Sbjct  123  AAA-AAACTTTTCACCGTCCCTCCAGTGGCGGAGAGAAGAAGAGCTTTGAAGATGTTCTG  181

Query  164  GTGCGGTGCTCGGAGAAGGGTGAGAGATGAGGGA---GGTGAAGATGAAGATGAATTGTA  220
            ||||||||||||||||||||||||||| ||||||   |||||||||||||||||| ||||
Sbjct  182  GTGCGGTGCTCGGAGAAGGGTGAGAGACGAGGGAGGTGGTGAAGATGAAGATGAAATGTA  241

Query  221  TGGATACAATGAGGAGATGGCGATGTTGGAGATATATAGCCAATCATGTAGAGAAGAAGC  280
            ||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct  242  TGGATACAACGAGGAAATGGCGATGTTGGAGATATATAGCCAGTCGTGTAGAGAAGAAGC  301

Query  281  GCTTATAGTGACGGCCATTGTCGACGATGAAGAAGTGGAAGTCGTAATCTTTAAAGGAGT  340
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  302  GCTTATAGTGACGGCCATTGTCGACGATGAAGAAGTGGAAGTTGTAATCTTTAAAGGAGT  361

Query  341  GTCGGCGTGCTTGAGCGGAGAAACGGCGGTGGATCCGGCGAGGAGTGTGTTGCCGGAGAG  400
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  362  GTCGTCGTGCTTGAGCGGAGAAACGGCGGTGGATCCGGCGAGGAGTGTGTTGCCGGAGAG  421

Query  401  AGCAGTGATTACAAAGATTGATAGAGTGAAAGGTCCTTTTGATCCTTCACAGATTCATTA  460
            |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  422  AGCAGTCATTACAAAGATTGATAGAGTGAGAGGTCCTTTTGATCCTTCACAGATTCATTA  481

Query  461  CATTCAAAAGGACATATCTTTTCAAGCCTTCAAGGACACCAGACTCAA  508
             ||||||| |||||| |||||||||||||||||||| |||||||||||
Sbjct  482  TATTCAAAGGGACATCTCTTTTCAAGCCTTCAAGGAGACCAGACTCAA  529



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24263093001


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5