BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484095
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01770.1 | Symbols: VIT1, ATVIT1 | vacuolar iron transporter... 1249 0.0
> AT2G01770.1 | Symbols: VIT1, ATVIT1 | vacuolar iron transporter
1 | chr2:334772-336438 REVERSE LENGTH=769
Length=769
Score = 1249 bits (676), Expect = 0.0
Identities = 734/763 (96%), Gaps = 0/763 (0%)
Strand=Plus/Plus
Query 1 ATCATCAATGTCGCCGGAAGAAGACAAGATTACAAGAATCTCTATCGAACCGGAGAAGCA 60
|||| |||||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 7 ATCAACAATGTCGTCGGAGGAAGATAAGATTACAAGAATCTCTATCGAACCGGAGAAGCA 66
Query 61 ATCACTTCTCGATCATCACACCGAGAAACACTTCACCGCCGGAGAAATCGTCCGTGACAT 120
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 67 AACACTTCTCGATCATCACACCGAGAAACACTTCACCGCCGGAGAAATCGTACGTGACAT 126
Query 121 CATCATCGGTGTCTCCGATGGTTTAACAGTTCCTTTTGCCCTCGCCGCCGGTCTCTCCGG 180
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 127 CATCATCGGCGTCTCTGATGGTTTAACCGTTCCTTTTGCCCTCGCCGCCGGTCTCTCCGG 186
Query 181 TGCCAATGCTTCTTCTTCTATCGTCCTTACCGCCGGAATCGCCGAAGTCGCGGCCGGTGC 240
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 187 TGCCAATGCTTCTTCTTCTATAGTCCTTACCGCTGGAATCGCCGAAGTCGCGGCCGGTGC 246
Query 241 TATCTCCATGGGACTCGGCGGGTATTTAGCGGCAAAGAGTGAAGAGGATCATTACGCGAG 300
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 247 TATCTCCATGGGACTCGGCGGGTATTTAGCGGCAAAGAGCGAAGAAGATCATTACGCGAG 306
Query 301 GGAGATGAAACGAGAACAAGAAGAGATCGTGGCCGTTCCTGAAACTGAGGCAGCTGAAGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GGAGATGAAACGAGAACAAGAAGAGATCGTGGCCGTTCCTGAAACTGAGGCAGCTGAAGT 366
Query 361 GGCAGAGATTCTGGCACAGTATGGGATAGAGCCACATGAATATTCACCTGTGGTTAATGC 420
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 367 GGCAGAGATTCTGGCACAGTACGGGATAGAGCCACATGAATATTCACCTGTAGTTAATGC 426
Query 421 TCTTCGTAAGAATCCTCAAGCTTGGCTTGATTTCATGATGAGGTTTGAGCTGGGATTAGA 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 427 TCTTCGTAAGAATCCTCAAGCTTGGCTTGATTTTATGATGAGGTTTGAGCTGGGATTAGA 486
Query 481 GAAGCCTGATCCAAAAAGAGCGTTACAAAGCGCGTTTACGATTGCAATCGCTTATGTTCT 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 487 GAAGCCTGATCCAAAAAGAGCGTTACAAAGCGCGTTCACGATTGCAATCGCTTATGTTCT 546
Query 541 TGGCGGTTTTATACCTTTACTTCCCTACATGTTGATACCGCATGCCATAGATGCGGTAGT 600
||||||||||||||| ||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 547 TGGCGGTTTTATACCGTTACTTCCCTACATGCTCATACCGCATGCCATGGATGCGGTAGT 606
Query 601 GGCGTCTGTGGTTATAACTCTGTTCGCTCTCTTCATATTTGGCTATGCAAAAGGGCATTT 660
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 607 GGCGTCTGTGGTTATAACTCTGTTTGCGCTCTTCATATTTGGCTATGCAAAAGGGCATTT 666
Query 661 CACCGGCAGCAAACCCCTTAGAAGTGCGTTTGAAACCGCCTTTATAGGAGCGATTGCCTC 720
||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 667 CACTGGAAGCAAGCCCCTCAGAAGTGCGTTTGAAACCGCCTTTATAGGAGCGATTGCTTC 726
Query 721 AGCGGCTGCTTTTTGTTTGGCTAAAGTTGTGCAACATTAGCAG 763
||| |||||||||||||||||||||||||||||||||||||||
Sbjct 727 AGCTGCTGCTTTTTGTTTGGCTAAAGTTGTGCAACATTAGCAG 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37072800486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5