BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484096
Length=2254
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01810.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 3232 0.0
AT1G66170.1 | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfa... 71.3 4e-11
> AT2G01810.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr2:347537-350179 FORWARD LENGTH=2321
Length=2321
Score = 3232 bits (1750), Expect = 0.0
Identities = 2097/2263 (93%), Gaps = 30/2263 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATAACCGTAAACGACGACGCTCTCACGGAGAGACaaaaaaaCCCCAAAATCATC 60
||||||||||||| | |||||||||||||||||||||||||| ||||||| || ||
Sbjct 1 ATGGCGATAACCG--CA-TACGACGCTCTCACGGAGAGACAAAAAGCCCCCAAAGTCCTC 57
Query 61 CTTATTAACGATTTTGCCATCCCTTCTTCTTCTTCATCATCATCACCTTTCATCAACCTC 120
|||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||||
Sbjct 58 CTTATTAACGATTTTGCCAT--C-TCTTCTTCTTCATCATCACCACCTTTCTTCAACCTC 114
Query 121 GCCGCAACTTTCCGCGACAACATCAGATCGTTCCTCCATGAATACGCCGAGATTGAAGAT 180
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 115 GCCGCAACTTTCCGCGACAACATCAGATCGTTCCTCCGTGAATATGCCGAGATTGAAGAT 174
Query 181 TACACCATCGACGGAGCCACCGTCTCTACCCTTTTCCTTGGAAACCAAGCAAACGGCGTC 240
||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||
Sbjct 175 TACACCATCGACGGAGCCACCGTCTCTACTATTTTCCTTGGAAGCCAAGCAAATGGCGTC 234
Query 241 GTTTTCCCTCTTTATATCATCGAAGAACAAATCTCTGCTTCTTCTCCAAACCCACTCTGC 300
|||||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||
Sbjct 235 GTTTTCCCTCTTTACATCATCGAACAACAAATCTCTGATTCTTCTCCAAACCCTCTCTGC 294
Query 301 GATTTCTGTCGATGCGTTGGTTGGGGTCATCACTATGTATCGAAGAGGAAGTATCATATG 360
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 295 GATTTCTGTCGATGCTTTGGTTGGGGTCATCACTATGTAACGAAGAGGAAGTATCATATG 354
Query 361 ATAATACCAAAGATTGATGAATGGAATGAGCCATTGACGAGCA-AAAGCTTGAAGCTTTC 419
||||| ||||| ||||||||||||||||||||||| ||| | ||||||||| ||||||
Sbjct 355 ATAATCCCAAACCGTGATGAATGGAATGAGCCATTGAAGAG-AGAAAGCTTGACGCTTTC 413
Query 420 TTCACATTTGATGCATGGTTTGATTCATTGCAATGGTTTTGGTCATTTGCTTTGTATCAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TTCACATTTGATGCATGGTTTGATTCATTGCAATGGTTTTGGTCATTTGCTTTGTATCAA 473
Query 480 CACTGATATTGATGATCCTGCTTACCTCTCTGGTCACCAAATCATGGACTTTTGGGATCG 539
||||||| ||||||||||| | ||||||||||| |||||||||||||||||||||| ||
Sbjct 474 CACTGATCTTGATGATCCTAATCACCTCTCTGGTGACCAAATCATGGACTTTTGGGACCG 533
Query 540 TCTTTGCACTATTCTTCACACTAGGAAGATTTCTTTGGATGATACATCTAAGAAGGGAGC 599
||||||| ||| ||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 534 TCTTTGCTCTACTCTCCACACTAGGAAGATATCTTTGGATGATACATCGAAGAAGGGAGC 593
Query 600 GATCGATCTGAGGCTGCTCCATGGTGTTGCATATGGTCGACCATGGTTTGGGAAATGGGA 659
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GATGGATCTGAGGCTGCTCCATGGTGTTGCATATGGTCGACCATGGTTTGGGAAATGGGA 653
Query 660 TTATATGTTTTCTCATGGAAGCTTTGGGGTCAGAAAAGATCAGTATTGGCGAGCTATTCT 719
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 654 TTATATGTTTTCTCATGGAAGCTTTGGGGTCAAAAAAGATCTGTATTGGCGAGCTATTCT 713
Query 720 CACTCTTAGCTCTATAGAAGTTGACAAGGTTATTG-AAGATTTTTCTGGAACAAGTAAAG 778
|||||||||||| ||||||||||||||| | |||| |||| || ||||||||||||||||
Sbjct 714 CACTCTTAGCTCAATAGAAGTTGACAAGAT-ATTGGAAGAATTATCTGGAACAAGTAAAG 772
Query 779 GGAGAGTGATGAAGACGATCATCGATTTCTACAGAGGATCCAGTGAAACCCCATTGGCCA 838
||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||
Sbjct 773 GGAGAGTGATGAAGAAGATCATCGATTTCTACAGAGGATCCACTGAAAGCCCTTTGGCCA 832
Query 839 CTCTCTCTGATTTGCTTCGGTTCATGCTTGCTTTCAGATCAAAAGCTCCCATTCAGAGGA 898
|||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| |
Sbjct 833 CTCTCTCTGATTTGCTTCGGTTCATGCTTGGTTTCATATCAAAAGCTCCCATTGAGAGAA 892
Query 899 AGACTGCAATGACACTAGTAGCAATGTCTTTAGATCCTGTTTCATATCCTA-TCCTTAGA 957
||||||||||| |||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 893 AGACTGCAATGGCACTAGTAGCAATGTCTTTAGATCATGTTTCATATCCTACTC-TTAGA 951
Query 958 GCTGATGAGAACACTGAGGTCTGCACATCCCCTAATCAGGAATCAGATGATAACGGATAT 1017
||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 952 GCTGATGAGAACAGTGAGGTCTGCACATCCCCTGATCAGGAATCAGATGATAATGGATAT 1011
Query 1018 GAATCTGGCAGAGAAACTGTCCTTGATGATCATGAA-ATTAGAATGGCGGGCATAAAGAC 1076
|||||||||||||| |||||||||||||||||| || | || || |||||||||| ||
Sbjct 1012 GAATCTGGCAGAGACACTGTCCTTGATGATCAT-AATACTACAACATCGGGCATAAA-AC 1069
Query 1077 C-CCTGAGTATTACTCATTTGATGATTTGGGCAGGAGAGAAAATTCTAGATGGCCTGGAA 1135
| ||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1070 CTCCTCAGTATTACTCATTTGATGATTTGAGCAGGAGAGAACATTCTAGATGGCCTGGAA 1129
Query 1136 GGAGGTTGAATGAGGCAGCCCAAGCAGTTCTCAAAGTGTTTAAAGAGCGAAAAAGTACCA 1195
||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 1130 GGAGGTTGAATGATGCAGCCCAAGCGGTTCTCAAAGTGTTTAAAGAGCGAAATAGCACCA 1189
Query 1196 TTACTCGTCATGAGCTTCGACAGGCTGTTAGAAATAGCATTGGTGATACAGGATTGATTG 1255
||| ||| || || ||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct 1190 TTAGTCGCCAAGACCTTCGGGAGGCTGTTAGAAGTAGCATTGGTGATACGGGATTGATTG 1249
Query 1256 ATTTCTTGCTCAAACACATTGACAAAGTTCTAATAGGTGACCAGATAGTGCAGAGGTTCA 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1250 ATTTCTTGCTCAAACACATTGACAAAGTTCTAATAGGTGACCAGATAGTGCAGAGGTCCA 1309
Query 1316 CAAACTCGAAAAGCCGGATGTTACAGTTCTCCCTCCGGACAATCAATTCCCATGTTCAAG 1375
||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1310 CAAACCCGAAAAGCAGGATGTTACAGTTCTCCCTCCGGACAATCAATTCCCGTGTTCAAG 1369
Query 1376 AGCAAGAACGGAAAAAGAAAAGGAAAATGAAACCGCAGGAAATCAATGAATGGACATCCA 1435
||||| |||||||||||||||||||| |||| |||||||||| || |||||| ||||| |
Sbjct 1370 AGCAAAAACGGAAAAAGAAAAGGAAAGTGAAGCCGCAGGAAACCAGTGAATGCACATCTA 1429
Query 1436 CCACTCCCGGACTGAGTCCGTACGATGACATTCTCTATCTGTATCAGAATATCTTGTTAA 1495
||||||| |||||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 1430 CCACTCCTGGACTGAGTCCGTACGATGATATTCTCTATCTATATCAGAATCTCTTGTTAA 1489
Query 1496 CTCATCTTGATTCAGACACATACAGTGAAGCGTCTCAGATTATCTTGAACTGCAAGAGCT 1555
|| ||| |||||||||| ||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1490 CTTATCCTGATTCAGACTTATACAGTGAAGCGTCTCAGGTTATCTTGAAGTGCAAGAGCT 1549
Query 1556 TTATAAAAGAATGGTCTTACCAGGAACAAAATCCTTTAACAGTTAGCTGCCAAGTTCTGC 1615
|| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
Sbjct 1550 TTGTAAAAGAATGGTCTTACCAGGAACAAAATCATTTAACAGTTAGCTGCCAGGTTCTTC 1609
Query 1616 CCAATCATGAAGAACTACTTAGAGACTTCACACGGTTATTACCGCCTGGTGAACTCGTGG 1675
||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1610 CCAATCATGAAGAACTACTCAGAGACTTCACTCGGTTATTACCCCCTGGTGACCTCGTGG 1669
Query 1676 TTGTTCCTGAAAACGCAACCATCAAAGAACTGAAATTTGCAGCAGAGAAAGCTCTGAGGG 1735
|||||| |||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 1670 CTGTTCCGGAAAACGCAACCATCAGAGAACTGAAATCTGCAGCAGAGAAAGTTCTGAGGG 1729
Query 1736 ACACTTACTTCATAACGGAGACATTTGAAGTGTTGGAGATAAGAAACAGGTATCTGGAGA 1795
||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1730 ACACTTACTGCATAACAGAGACATTTGAAGTGTTGGAGATAAGAAACAGGTATCTCGAGA 1789
Query 1796 AGCTAGATGACAACTTG-GCTCTAAAATCACAAAGGATTACAGAGTTTCTGGTGAAAGGG 1854
||||||| |||||| || | ||||||||||||| ||| |||||||||| |||||||||||
Sbjct 1790 AGCTAGACGACAACGTGAG-TCTAAAATCACAAGGGAATACAGAGTTTATGGTGAAAGGG 1848
Query 1855 TTTGGTCTGGACATAGGCACAGAGTTAAGGTATGAAGGTGGTTTTGATGACTGGACTGTT 1914
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 1849 TTTGGTCTGGACATAGGCACAGAGTTAAGGTATGAAGGCGGATTTGATGACTGGACCGTT 1908
Query 1915 GACTGCAAATGCGGAGCTAGAGATGATGATGGTGAGAGAATGGTGGCTTGTGATGCTTGC 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 GACTGCAAATGCGGAGCTAGAGATGATGATGGTGAGAGAATGGTGGCTTGTGATGCTTGC 1968
Query 1975 AAGGTTTGGCACCACACACTCTGCAATTCCATCGAAGACGATGAAGCTGTGCCCTCTGTG 2034
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1969 AAGGTTTGGCACCACACACTTTGCAATTCCATCGAAGACGATGAAGCTGTGCCCTCCGTG 2028
Query 2035 TTTCTCTGTAACAGGTGTTATGAAGATAGCTTGAGATCCAAGAAACGCAACCTCAGCATT 2094
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2029 TTTCTCTGTAACATGTGTTATGGAGATAGCTTGAGATCCAAGAAACGCAACCTCAGCATT 2088
Query 2095 CGCTAGCCCTAGCTTGCGCAGAAAGCCACCTTGTGTTGCAGGAGATTATATATCATCCAT 2154
|||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||
Sbjct 2089 CGCTAGCCCTAGCTTGCGCAAAAAGTCAGCTTGTGTTGCAGGAGATTATATATCACCCAT 2148
Query 2155 TATTGTGGTCAAAAACTCAAAACTTACCAACCATAGCCATAGA-CTAAATTTTATGATGA 2213
|||| ||||||||| || | |||||||||||||||||| |||| |||||| || |
Sbjct 2149 TATTATGGTCAAAA-CT------T-ACCAACCATAGCCATAGATCTAA-TTTTATAATTA 2199
Query 2214 AGACTTTT--GGCATAAAAATTTATCTGCATCAATATATGTTT 2254
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct 2200 AGACTTTTTTGGCATAAAATTTTATCTGCATAAATATATGTTT 2242
> AT1G66170.1 | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfamily
protein | chr1:24638685-24641494 REVERSE LENGTH=2495
Length=2495
Score = 71.3 bits (38), Expect = 4e-11
Identities = 44/47 (94%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 433 CATGGTTTGATTCATTGCAATGGTTTTGGTCATTTGCTTTGTATCAA 479
|||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 681 CATGGTTTGATTCATTGCAATGGTTTTGGTCATTTGGTATGTGTCAA 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111846814260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5