BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484097
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01818.1 | Symbols: | PLATZ transcription factor family pro... 1254 0.0
> AT2G01818.1 | Symbols: | PLATZ transcription factor family protein
| chr2:353457-355522 REVERSE LENGTH=916
Length=916
Score = 1254 bits (679), Expect = 0.0
Identities = 787/837 (94%), Gaps = 16/837 (2%)
Strand=Plus/Plus
Query 47 tttttGGATGATTTTGATCGGAGAAATATAAAATCTGCTCATTTGATCTATCAAAGGAAC 106
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 75 TTTTTGGATGATTTTGATCGGAGAAATATAAAATCTTCTCATCTGATCTATCAAAGGAAC 134
Query 107 TCAGTTTCTCATACCAAAATGAATCTGAGTGAGAAGAGAAGAAGTGAAGAAGATTGGATT 166
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 135 TCAGTTTCTCATACCAAAATGAATCTGAGTGAGAAGAGAAGAAGTGAAGAAGTTTGGATT 194
Query 167 GATACACTATTGAACTCAGAGTTCTTTGGGATATGTATGAATCATAAGTATCTTCGAAAG 226
|| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 195 GAAACACTACTGAACTCAGAGTTCTTTGGGATATGTATGAATCATAAGTATCTTAGAAAG 254
Query 227 AACGAGAAAAATGTGTTTTGCATTGATTGTAATGTGGAAATCTGCAGACATTGTTGTAAC 286
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 255 AACGAGAAGAATGTGTTTTGCATTGATTGTAATGTGGAAATATGCAGACATTGTTGTAAC 314
Query 287 ACAGTTACAGATTCACATTACCTCCATCGTCGTCTTCAGATCTGCAAATACGTTTATCAA 346
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 315 ACAGTTACAGATTCTCATTTCCTCCATCGTCGTCTTCAGATCTGCAAATACGTTTACCAA 374
Query 347 GATGTTCTTCGTCTCTTCGATATCCAACACTACTTCGACTGTTCCGAGATTCAGACATAT 406
|||||| |||||||| |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 375 GATGTTATTCGTCTCCTCGAAATCCAAAACTACTTCGACTGTTCCGAGATTCAGACATAT 434
Query 407 AAAATAAATGGAGAGAAGGCAATACATTTGAATTCAAGGCCACAAGCAAAAGATGCAAGA 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 AAAATAAATGGAGAGAAGGCAATACATTTGAATTCAAGGCCACAAGCAAAAGATGCAAGA 494
Query 467 CCTTCAACAAAATCCAAGAATGGTGCTTCATGTGTGACTTGTAAAAGATATATTCAAGAT 526
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 495 CCTTCAACAAAAGCCAAGAATGGTGCTTCATGTGTGACTTGTAAAAGATATATTCAGGAT 554
Query 527 CGTCCTAATCGATTTTGCTCTATCTCCTGCAAGATATCAACTCCTTCAAAAAAGCATAAA 586
| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 555 CATCCTAATCTTTTTTGCTCTATCTCCTGCAAGATTTCAACTCCTTCAAAAAAGCATAAA 614
Query 587 TTTTGTTTTTCTCCAAAATTGGAACAGAGTGTTTTGGAGAAAGAACACTCTAATCAAGAA 646
|||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||
Sbjct 615 TTTTGTTTTTCTCCAAAACTAGAACAGAGTGTTTTGGAGAAAGAACACTCTACTCAAGAA 674
Query 647 GAAAGCTTAGAAGaaaaaaaaTCGTGCACATCGTCCCTCACTGATGTTTCAGAAGATTCT 706
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GGAAGCTTAGAAGAAAAAAAATCGTGCACATCGTCCCTCACTGATGTTTCAGAAGATTCT 734
Query 707 GAAGTTTTATTGTGTAATTTTTCATTGAGACCACTCATGAGAATACTCAAGAGAAAAGGA 766
|||||||||||| || |||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 735 GAAGTTTTATTGAGTGATTTTTCATTTAGACCACTCTTGAGAATACTCAAGAGAAAAGGA 794
Query 767 ATTTCTCGAAGATCTCCTCTT-TATTGAAttttttt-------G--T----CATCAAA-C 811
|||||||||||||||||| || |||||| ||||||| | | ||||||| |
Sbjct 795 ATTTCTCGAAGATCTCCT-TTCTATTGATTTTTTTTTTTCTTTGGATTTGTCATCAAAGC 853
Query 812 CATACATTATGTGTATTTTATTTTTAAAAAAGATATTATATCGGGTATCAATATTAT 868
||||||||||||||||||||| | | |||||||||||||||||| ||||||||||||
Sbjct 854 CATACATTATGTGTATTTTATCTATGAAAAAGATATTATATCGGCTATCAATATTAT 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42347385921
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5