BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484098
Length=3036
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01820.1 | Symbols: | Leucine-rich repeat protein kinase fa... 4475 0.0
> AT2G01820.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr2:357431-360681 REVERSE LENGTH=3065
Length=3065
Score = 4475 bits (2423), Expect = 0.0
Identities = 2822/3012 (94%), Gaps = 37/3012 (1%)
Strand=Plus/Plus
Query 1 ATGTCGAAA-TCCCATTTGGGTACTCTCTGTTTCTTCATCTCTTTACTGGGTTTTATCAA 59
||||| ||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1 ATGTC-AAATTCCCATTTGGGTACTCTCTGTTTCATCATCTCTTTACTGGGTTTGGCCAA 59
Query 60 TCTCTCAGTTTCTCAAAACGGTGTCGATGATTCGACTATGGAAGCTCTCAAATCAAGTCT 119
| ||||| ||||||||| |||| ||||||||||||||||| || ||||||||||||||||
Sbjct 60 TTTCTCACTTTCTCAAACCGGTCTCGATGATTCGACTATGCAATCTCTCAAATCAAGTCT 119
Query 120 GAATCTTACATCAGACGTCGATTGGTCTAACCCTAACCCTTGTAAATGGGAATCTGTTGA 179
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 120 GAATCTTACATCAGACGTCGATTGGTCTAACCCTAACCCTTGTAAATGGCAATCTGTTCA 179
Query 180 ATGCGATGGAAGTAATCGTGTTACTAAGATTCAGCTTAAACAAAAAGGGATTCGTGGAAC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATGCGATGGAAGTAATCGTGTTACTAAGATTCAGCTTAAACAAAAAGGGATTCGTGGAAC 239
Query 240 TCTTCCTACTGATCTTCAGAAACTCTCTGAATTGGTTGTTCTTGAGCTTTTTCTCAATCG 299
|||||||||| ||||||||| ||||||||||||||| |||| |||||||||||||||||
Sbjct 240 TCTTCCTACTAATCTTCAGAGTCTCTCTGAATTGGTTATTCTCGAGCTTTTTCTCAATCG 299
Query 300 AATCTCTGGTCCCATTCCTGATCTCTCTGGTCTTA-GTCGTTTACAGACTCTCAATCTAC 358
||||||||||| ||||||||||||||||| |||| ||||||||||||||| |||||||
Sbjct 300 TATCTCTGGTCCTATTCCTGATCTCTCTGG-CTTATCTCGTTTACAGACTCTGAATCTAC 358
Query 359 ACGACAATCTCTTTGA-TTCTGTACCTAAGAATCTCTTCTCTGGTATGAGTTCTCTTCAA 417
|||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 359 ACGACAATCT-TTTTACCTCTGTACCGAAGAATCTCTTCTCTGGTATGAGTTCTCTTCAA 417
Query 418 GAAGTGTATCTCGAGAACAATCCGTTTAATCCTTGGCAAATTCCAGACTCCATTAAAGAA 477
||| ||||||||||||||||||||||| |||||||| |||||||||| || ||||||||
Sbjct 418 GAAATGTATCTCGAGAACAATCCGTTTGATCCTTGGGTAATTCCAGACACCGTTAAAGAA 477
Query 478 GCTACGTCTCTTCAGAATCTTACACTCTCCAATTGCAGCATTTTTGGAAAGATCCCAGAT 537
||||||||||| |||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct 478 GCTACGTCTCTGCAGAATCTAACTCTCTCCAATTGCAGCATTATTGGAAAGATCCCAGAT 537
Query 538 TTCTTTGGTTCTCAGTCACTTCCGAGTC-TGACGAATCTGAAACTGTCTCAGAATCGTTT 596
||||| |||||||||||||||||||| | |||||||||||||||| ||||||||| ||||
Sbjct 538 TTCTTCGGTTCTCAGTCACTTCCGAG-CTTGACGAATCTGAAACTATCTCAGAATGGTTT 596
Query 597 ACAGGGAGAGTTACCGGTGAGTTTTGCTGGTACTTCGCTTCAGTCTCTGTTCTTGAATGG 656
| | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 597 AGAAGGAGAGTTACCGATGAGTTTTGCTGGTACTTCGATTCAGTCTCTGTTCTTGAATGG 656
Query 657 TCAAGTGGGAGAGCAGCTTAATGGATCGATCTCGATATTGAGGAATATGACTTCGCTCGT 716
|| ||| |||||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct 657 TC-------AGA--AGCTTAATGGATCGATCTCGGTATTGGGGAACATGACTTCGCTCGT 707
Query 717 TGAGGTTTCTCTTCAAGGAAATAAGTTCTCAGGTCCGATTCCTGATCTCTCTGGTCTGTT 776
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||| || |
Sbjct 708 TGAGGTTTCTCTTCAAGGAAATCAGTTCTCAGGTCCAATTCCTGATCTCTCTGGTTTGGT 767
Query 777 ATCTCTCCGTGTGTTTAATGTTAGAGAGAATCAGCTTACTGGTGTTGTTCCACAGTCTTT 836
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 768 ATCTCTACGTGTGTTTAATGTTAGAGAGAATCAGCTCACTGGTGTTGTTCCACAGTCTTT 827
Query 837 GATTCGTTTGAATTCGCTTACTACTGTGAATTTAACCAATAATT-TGCTTCAAGGACCGA 895
| || |||||| |||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 828 GGTTAGTTTGAGTTCGCTTACTACTGTGAATTTAACTAATAATTAT-CTTCAAGGACCGA 886
Query 896 CTCCGTTGTTTGGCAAATCCGTTGGTGTTGATATATTCAACAACACGAATAGTTTTTGTA 955
||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||
Sbjct 887 CTCCGTTGTTTGGCAAATCCGTTGGTGTTGATATAGTCAACAACATGAATAGCTTTTGTA 946
Query 956 CTAGTATAGCTGGTGAGGCTTGTGATCCTCGTGTGGATAATTTGGTATCTATAGCTGAAT 1015
||| | ||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 947 CTAATGTAGCTGGTGAGGCTTGTGATCCTCGTGTGGATACTTTGGTATCTGTAGCTGAAT 1006
Query 1016 CATTTGGATATCCAGTGAAGCTTGC-GAGTAGTTGGAAAGGAAACAATCCGTGTGTTAAC 1074
||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 1007 CATTTGGATATCCAGTGAAGCTTGCGGA-AAGTTGGAAAGGAAACAATCCTTGTGTTAAC 1065
Query 1075 TGGGTTGGGATTACTTGTTCTGGAGGTAACATTACGGTGGTTAATCTGAGGAAACAGGAT 1134
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1066 TGGGTTGGGATTACTTGTTCTGGAGGTAACATTACGGTTGTTAATATGAGGAAACAGGAT 1125
Query 1135 CTTTCGGGTACGATATC-CGCGAGTTTAGCTAACCTTACTTCATTGGAGACTATCAATCT 1193
|| ||||||||||| || | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1126 CTCTCGGGTACGATTTCTC-CGAGTTTAGCTAAGCTTACTTCATTGGAGACTATCAATCT 1184
Query 1194 TTCTGATAATGAACTCTCTGGGCCTATACC-GACTGAGCTTACCACATTGCCTAAGCTTC 1252
| |||||||| ||||||| |||| |||||| || |||||||||||||||| ||||||||
Sbjct 1185 TGCTGATAATAAACTCTCCGGGCATATACCTGA-TGAGCTTACCACATTGTCTAAGCTTA 1243
Query 1253 GGACACTTGATGTGTCTAACAACGATCTATATGGAGT-CGTGCCAAAGTTTCCGGACACT 1311
|| |||||||||||||||||||||| | |||||| | | ||||||||||| ||| |||
Sbjct 1244 GGTTACTTGATGTGTCTAACAACGATTTTTATGGAATAC-CGCCAAAGTTTCGGGATACT 1302
Query 1312 GT-ACATTTGGTGATTGAAGGGAACGTTAATATCGGAAAGAAAGGACCTATCTCACCGAG 1370
|| || |||||||| ||||||||||| ||| || || ||||| ||||||| | | ||||
Sbjct 1303 GTGAC-TTTGGTGACTGAAGGGAACGCTAACATGGGGAAGAATGGACCTAACAAAACGAG 1361
Query 1371 TGGTTCTCCTGGAGCTTCACCTGGAAGTAAACCTTCAGGAGGAAGTGGTGGCAGTGAAAC 1430
|| | |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1362 TGATGCTCCTGGAGCTTCACCAGGAAGTAAACCTTCAGGAGGAAGTGATGGCAGTGAAAC 1421
Query 1431 TTCTAAGAAGTCAAGCAATGTCAAGATTATTGTTCCTGTGGTTGGTGGAGTTGTTGGTGC 1490
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1422 TTCTAAGAAATCAAGCAATGTCAAGATTATTGTTCCTGTGGTTGGTGGGGTTGTTGGTGC 1481
Query 1491 ATTGTGTCTGGTTGGGCTCGGCGTGTGTCTTTACGCGAAGAAAAGGAAGAGACCTGCTAG 1550
||||||| |||||||||| || ||||||||||| ||||||||||||||| ||||||||||
Sbjct 1482 ATTGTGTTTGGTTGGGCTTGGTGTGTGTCTTTATGCGAAGAAAAGGAAGCGACCTGCTAG 1541
Query 1551 AGTTCAGAGTCCAAGCAGCAACATGGTTATTCATCCGCATCACTCGGGTGACAACGATGA 1610
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1542 AGTTCAAAGTCCAAGCAGCAACATGGTTATTCATCCGCATCATTCGGGTGACAACGATGA 1601
Query 1611 CATTAAACTCACTGTTGCAGCTTCTAGTCTTAACAGTGGCGGAGGAAGTGATAGCTACAG 1670
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1602 CATTAAACTCACTGTTGCAGCTTCTAGTCTTAACAGTGGTGGAGGAAGTGATAGCTACAG 1661
Query 1671 TCACAGCGGAAGTGCGGCAAGCGATATTCACGTTGTGGAAGCTGGGAACTTGGTTATATC 1730
||||||||||||||| || || |||||||||||||| |||||||||||||||||||||||
Sbjct 1662 TCACAGCGGAAGTGCAGCGAGTGATATTCACGTTGTTGAAGCTGGGAACTTGGTTATATC 1721
Query 1731 GATACAGGTCTTGAGGAATGTGACGAATAACTTCAGCGAAGAGAATATTCTCGGGAGAGG 1790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 GATACAGGTCTTGAGGAATGTGACGAATAACTTCAGCGAAGAGAATATTCTCGGGAGAGG 1781
Query 1791 TGGTTTCGGGACAGTTTACAAAGGCGAACTCCACGATGGAACGAAAATAGCTGTGAAGAG 1850
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1782 TGGTTTCGGGACAGTTTACAAAGGCGAACTCCACGATGGAACAAAAATAGCTGTGAAGAG 1841
Query 1851 AATGGAGTCCTCGGTTGTGAGTGATAAGGGACTTACTGAGTTTAAATCTGAGATCACTGT 1910
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 AATGGAGTCTTCGGTTGTGAGTGATAAGGGACTTACTGAGTTTAAATCTGAGATCACTGT 1901
Query 1911 TCTGACTAAAATGCGCCATCGTCATCTCGTTGCGCTTCTTGGGTACTGCCTTGACGGGAA 1970
||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1902 TCTGACTAAAATGCGTCATCGTCATCTCGTTGCGCTTCTCGGTTACTGCCTTGACGGGAA 1961
Query 1971 CGAGAGGCTCCTTGTCTATGAGTACATGCCTCAGGGGACACTGAGTCAGCATCTGTTTCA 2030
||||||||| |||||||| ||||||||||| ||||||||||| ||||||||| |||| ||
Sbjct 1962 CGAGAGGCTTCTTGTCTACGAGTACATGCCACAGGGGACACTAAGTCAGCATTTGTTCCA 2021
Query 2031 TTGGAAAGAGGAAGGGAGAAAACCACTAGACTGGACTAGACGGCTGGCGATTGCATTGGA 2090
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2022 CTGGAAAGAGGAAGGGCGAAAACCGTTAGACTGGACTAGACGGCTGGCGATTGCATTGGA 2081
Query 2091 TGTAGCTCGAGGTGTCGAGTATCTGCACACACTTGCGCATCAGAGCTTCATCCATAGGGA 2150
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2082 TGTAGCTCGAGGTGTCGAGTATCTGCACACACTTGCGCATCAGAGCTTTATCCATAGGGA 2141
Query 2151 TCTAAAGCCATCAAACATCCTTCTTGGTGATGATATGCGCGCTAAAGTCTCTGACTTTGG 2210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2142 TCTAAAGCCATCAAACATCCTTCTTGGTGATGATATGCGCGCTAAAGTCTCTGACTTTGG 2201
Query 2211 GTTAGTCCGTTTAGCCCCTGATGGCAAATACTCCATCGAGACCCGAGTCGCTGGGACTTT 2270
|||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 2202 GTTAGTACGTTTAGCCCCTGATGGCAAATACTCCATTGAGACTCGAGTAGCTGGGACTTT 2261
Query 2271 CGGATACCTTGCCCCAGAATACGCAGTGACTGGAAGAGTGACGACGAAAGTAGACATTTT 2330
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 2262 CGGATACCTTGCCCCAGAATACGCAGTGACGGGAAGAGTGACGACCAAGGTAGACATTTT 2321
Query 2331 CAGCCTTGGGGTCATACTTATGGAGCTAATCACTGGTCGTAAAGCCCTAGACGAGACGCA 2390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2322 CAGCCTTGGGGTCATACTTATGGAGCTAATCACTGGTCGTAAAGCCCTAGACGAGACGCA 2381
Query 2391 ACCCGAAGACAGCGTTCATCTAGTCACATGGTTCCGAAGGATAGCAGCCAGCAAAGACGA 2450
||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 2382 ACCCGAAGACAGCGTCCATCTAGTCACATGGTTCCGTCGGGTAGCAGCCAGCAAAGACGA 2441
Query 2451 GAATGCCTTTAAAAACGCAATTGACCCAAACATCAGCCTCGACGACGATACCTTAGCCAG 2510
|||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 2442 AAATGCCTTCAAAAACGCAATAGACCCAAACATCAGCCTCGACGACGATACCGTAGCCAG 2501
Query 2511 TATTGAAAAAGTCTGGGAGCTTGCTGGTCATTGCTGTGCCCGTGAGCCTTACCAAAGACC 2570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2502 TATTGAAAAAGTCTGGGAGCTTGCTGGTCATTGCTGTGCCCGTGAGCCTTACCAAAGACC 2561
Query 2571 TGACATGGCTCACATCGTTAACGTCCTTTCTTCACTCACCGTCCAATGGAAACCAACTGA 2630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2562 TGACATGGCTCACATCGTTAACGTCCTTTCTTCACTCACCGTCCAATGGAAACCAACTGA 2621
Query 2631 GACCGACCCAGATGACGTCTACGGGATAGACTACGATATGCCGCTTCCGCAAGTGCTTAA 2690
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2622 GACCGACCCTGATGACGTCTATGGGATAGACTACGATATGCCGCTTCCGCAGGTGCTTAA 2681
Query 2691 GAAATGGCAAGCTTTCGAGGGACTTAGCCAGACCGCGGATGACTCGGGTTCTTCGTCTTC 2750
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2682 GAAATGGCAAGCTTTCGAGGGACTAAGCCAGACCGCGGATGACTCGGGATCTTCGTCTTC 2741
Query 2751 GGCTTATGGAAGCAAAGACAATACACAGACAAGTATCCCAACTCGTCCATCTGGATTTGC 2810
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2742 GGCTTATGGAAGCAAAGACAATACGCAGACAAGTATCCCAACTCGCCCATCTGGATTTGC 2801
Query 2811 TGACTCGTTCACTTCTGTGGATGGACGTTGAAGAAATCAAGATTGCGTAAAACGTTTTAG 2870
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2802 TGACTCGTTCACTTCTGTGGATGGACGTTGAAAAAATCAAGATTGCGTAAAACGTTTTAG 2861
Query 2871 TAGAAGAAGAAGATGAAGCATTGTGTGATAAAtctctctctctctctctctctctttttt 2930
|||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||||
Sbjct 2862 TAGAAGAAGAAGATGAAGCATTGTGTGATAAATCTCTCTCTCGCTCTC-C-CT-TTTTTT 2918
Query 2931 t-ttttGC-CTGAAGCAT-TT-ACTTATGACTTCGTTTTTACCTACTGCAAACTTTTGGT 2986
|||| | ||||||||| || ||||||||||||||||||| ||||||||| ||||||||
Sbjct 2919 GCTTTT-CTCTGAAGCATATTTACTTATGACTTCGTTTTTATCTACTGCAAGCTTTTGGT 2977
Query 2987 TAGTGTATTTAT 2998
||||||||||||
Sbjct 2978 TAGTGTATTTAT 2989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150952331487
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5