BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484102
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01850.1 | Symbols: EXGT-A3, XTH27, ATXTH27 | endoxyloglucan... 1565 0.0
> AT2G01850.1 | Symbols: EXGT-A3, XTH27, ATXTH27 | endoxyloglucan
transferase A3 | chr2:385199-387344 FORWARD LENGTH=1383
Length=1383
Score = 1565 bits (847), Expect = 0.0
Identities = 1046/1139 (92%), Gaps = 26/1139 (2%)
Strand=Plus/Plus
Query 131 AATGGAAACTTTGACTCGTTTATTGGTTTTCATGACTCTGTTTTCCGGTTTAGTTTCTGG 190
|||||| ||| ||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 175 AATGGAGACTCTGAGTCGTTTATTGGTTTTCATGTCTCTGTTTTCCGGTTTAGTTTCTGG 234
Query 191 ATTTGCTCTGCAAGACCTTCCAATCACATCTTTTGAAGAAGGTTACACTCAACTTTTTGG 250
||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 235 ATTTGCTCTGCAAAATCTTCCAATCACATCTTTTGAAGAAAGTTACACTCAACTTTTTGG 294
Query 251 TGATAAGAACTTGTTTGTTCATAAAGATGGCAAATCTGTCCGGTTAACACTCGATGAAAG 310
||| |||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 295 TGACAAGAACTTATTTGTTCATCAAGATGGCAAATCTGTCCGGTTAACGCTCGATGAAAG 354
Query 311 AACCGGTTCTGGTTTTGTCTCAAATGATCT-TTACTTGCATGGATTCTTCAGTGCTTCTA 369
||||||||| |||||||| ||||||||| | ||||||||||||||||||||||||||| |
Sbjct 355 AACCGGTTCCGGTTTTGTTTCAAATGAT-TATTACTTGCATGGATTCTTCAGTGCTTCAA 413
Query 370 TCAAATTACCTTCTGATTATTCAGCTGGTGTTGTTGTTGCCTTTTATATGTCAAATGGAG 429
| |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||
Sbjct 414 TTAAATTACCTTCTGATTATACAGCTGGAGTTGTTGTTGCCTTTTATATGTCTAATGGAG 473
Query 430 ATATGTATGAGAAGAATCATGATGAGATAGATTTTGAGTTTCTTGGTAACATTAGAGGAA 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 474 ATATGTATGAGAAGAATCATGATGAGATAGATTTTGAGTTTCTTGGTAACATTAGAGAAA 533
Query 490 AAGAATGGAG-GATTCAGACAAACATTTACGGTAATGGAAGTACTCATTTAGGAAGAGAA 548
|||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 534 AAGAATGGAGAG-TTCAGACAAACATTTACGGTAATGGAAGTACTCATTCAGGAAGAGAA 592
Query 549 GAGAGATATAATCTTTGGTTTGATCCAACTGAAGATTTTCATCAATACAGTATCCTCTGG 608
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 593 GAGAGATATAATCTCTGGTTTGATCCTACTGAAGATTTTCATCAATACAGTATCCTCTGG 652
Query 609 TCTGATTCTCACATCATATTCTTTGTGGACAATGTTCCGATCAGAGAGGTCAAACGTACG 668
|||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 653 TCTGATTCTCACATCATATTCTTTGTAGACAATGTTCCTATTAGAGAGGTCAAACGTACT 712
Query 669 GCGTCAATGGGTGGTGACTTTCCGTCTAAGCCGATGTCACTCTACACAACCATATGGGAC 728
||| |||||||||| ||||||| || ||||||||||| ||||||||||| |||||||||
Sbjct 713 GCGGAAATGGGTGGTCACTTTCCATCAAAGCCGATGTCTCTCTACACAACAATATGGGAC 772
Query 729 GGTTCTAAATGGGCGACTAACGGTGGAAAGTACGGTGTAAACTACAAATATGCACCTTAC 788
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 773 GGTTCTAAATGGGCAACTAACGGTGGAAAGTACGGTGTAAACTACAAATATGCGCCTTAC 832
Query 789 ATTGCGCGGTTTTCTGATCTAGTCCTTCACGGCTGCCCCGTGGACCCAATCGAGCAGTTT 848
||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 833 ATTGCGCGGTTCTCGGATCTAGTCCTGCACGGCTGCCCCGTGGACCCTATCGAGCAGTTT 892
Query 849 CCGAGGTGCGATGAAGGAGCAGCTGAGGATATCCGTGCGGCACAGGAGATTACCCCGTCT 908
||||||||||||||||| || ||||||||||| |||||||| || |||||||| || ||
Sbjct 893 CCGAGGTGCGATGAAGGCGCGGCTGAGGATATGCGTGCGGCGCAAGAGATTACTCCTTCA 952
Query 909 CAGAGGAAG-AAAATGGATGTTTTCAGGCGGAAACACATGACTTATTCGTATTGCTATGA 967
|| |||| | ||||||||||||||||| |||| || |||||| ||||| |||||||||||
Sbjct 953 CAAAGGA-GTAAAATGGATGTTTTCAGACGGAGACTCATGACATATTCATATTGCTATGA 1011
Query 968 TCGGACAAGGTACAAGGTTGCTTTATCGGAGTGTGTGGTGAATCCCGCAGAGGCTCAAAG 1027
|||| | |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1012 TCGGGCTAGGTACAATGTTGCTTTATCGGAGTGTGTGGTGAATCCCGCTGAGGCTCAAAG 1071
Query 1028 GCTTAGAGTTTATGATCCAGTCACATTTGGCGGAATTCCTAGGCGCCACCGCAATGGAAA 1087
|||||| ||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||
Sbjct 1072 GCTTAGGGTTTATGATCCGGTCAGATTTGGCGGCATTCCGAGGCGCCACCGCAATGGAAA 1131
Query 1088 GCACCGGAGCAAGAGAAGCCGGGTTGATGGAACAGAGTCGATATGATAACATATAT-GG- 1145
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1132 GCACCGGAGCAAGAGAAGCCGGGTTGATGGAACCGAGTCGATATGATAACATATATAGGC 1191
Query 1146 ------GT--G----AGATTTGGAGGGGTTCTATAATAAGTCCAT-ATATTGGTTATTTA 1192
|| | |||||||| ||| ||||||||||||||||| || |||||||||||
Sbjct 1192 AAAATAGTATGGGTGAGATTTGG-GGG-TTCTATAATAAGTCCATTATTTTGGTTATTTA 1249
Query 1193 TGATTCAATGCATTTTCAGATTTAGAGGGGGGCATTTTTGTCATTTGTT-GCTTGTATA 1250
|||||||||||||||||| || |||||| || ||||||||||||||||| | |||||||
Sbjct 1250 TGATTCAATGCATTTTCACATATAGAGGAGG-CATTTTTGTCATTTGTTAG-TTGTATA 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63051884520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5